G33434


Basic Information

Item Value
gene id G33434
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5654080 ~ 5654764 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU49238
CTTATTTCTCTTTGCAGTCTGCAACGGCAGATAAACCTTCTGACCAGAGCCTGGATTTGCGTGGcagctttttctttctctttataccCTTTCCTTTCCTCCCGCGCTATCCTGGCTTTATCCAGGAACTGGGATTTGGAGGTTTGGGTAGCAGTGAACATGTTTTCACTCTTGACCTAATGTAGTGACTGGTAATACTTCTGCTTCCACGGGTCACATGAATGCTATcacatattaacatttttcGTTCTGGAGGTCCATTGGACTCTACAGATCAGAAGAATAAATTTCTTTGagacattttattaatgcacgAAAATCAATAGCACGTCTTAAAACAGCACAAGCAATCCACTGATTTAGGAACATGAGTAAAACGttgctgtattaaaaaaaaacttattaaaattattctgGAAAATGAGCGTATGTTATAAATTAAATGCTCATTTtactttgctttttaaaaaaacacatcaacgGATTATATAGCAGAAAGTGGCATCAAGACCGAG

Function

GO:

id name namespace
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0042594 response to starvation biological_process
GO:0031667 response to nutrient levels biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:0016054 organic acid catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49238 True 515 lncRNA 0.37 2 5654080 5654764

Neighbor

gene id symbol gene type direction distance location
kctd10 kctd10,LOC107597295,LOC107595924,LOC107672630,LOC107752136 coding downstream 1051 5648255 ~ 5653029 (-)
foxn4 foxn4,LOC107654613 coding downstream 24794 5621069 ~ 5629286 (-)
LOC122345133 LOC107752131,LOC107684984,LOC107595918,LOC107672624,LOC107741247 coding downstream 199324 5435977 ~ 5454756 (-)
ranbp1 ranbp1,LOC107684983,LOC107752129,LOC107597301,LOC107672632,LOC107741249 coding downstream 218949 5430566 ~ 5435131 (-)
LOC122346225 NA coding downstream 222686 5431264 ~ 5431394 (-)
mmab LOC107752154,LOC107597358,LOC107654603,LOC107672637,LOC107741242,LOC107595926 coding upstream 14029 5668793 ~ 5671129 (-)
trpv4 trpv4,LOC107752140,LOC107741238,LOC107654595,LOC107672638 coding upstream 165588 5820352 ~ 5842997 (-)
gltpa gltpa,gltp,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding upstream 188914 5843678 ~ 5849639 (-)
git2a git2,git2a,LOC107595928,LOC107752141,LOC107597287 coding upstream 204515 5859279 ~ 5884164 (-)
slc6a4b slc6a4b,LOC107654599,LOC107597334,LOC107595929,LOC107672619,LOC107741230,LOC108434249,LOC106580268 coding upstream 244131 5898895 ~ 5909991 (-)
G33423 acacb,LOC107752147,LOC107654593 non-coding downstream 33375 5618265 ~ 5620705 (-)
G33409 LOC107684993,LOC107597297,LOC106585658 non-coding downstream 51876 5601409 ~ 5602204 (-)
LOC122344984 LOC107597340,LOC107752133,LOC107684988,LOC107672606 non-coding downstream 56451 5574164 ~ 5597629 (-)
LOC122344983 LOC107684988,LOC107597340,LOC107752133,LOC107741245,LOC107672606 non-coding downstream 58906 5588045 ~ 5595174 (-)
LOC122345808 NA non-coding downstream 484831 5142578 ~ 5169249 (-)
G33446 NA non-coding upstream 24919 5679683 ~ 5684284 (-)
G33533 NA non-coding upstream 241364 5896128 ~ 5897353 (-)
G33542 NA non-coding upstream 291225 5945989 ~ 5946874 (-)
G33544 NA non-coding upstream 298512 5953276 ~ 5959213 (-)
G33549 NA non-coding upstream 314478 5969242 ~ 5982803 (-)
G33175 NA other downstream 1031022 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 1460999 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 1755502 3878650 ~ 3898578 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other downstream 1901316 3744675 ~ 3752764 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 2693903 2951462 ~ 2960177 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 1169407 6824171 ~ 6826182 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other upstream 1268082 6922846 ~ 6943203 (-)
G33998 LOC108444092 other upstream 1727582 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 2052206 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 2063801 7718565 ~ 7721758 (-)

Expression


Co-expression Network