G33533


Basic Information

Item Value
gene id G33533
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5896128 ~ 5897353 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU49417
CGAGCTGTGTTTAGATCGGGTCGCATCCCGCTCGCTTTTTCCGCGACGATGTCAGCAGCGCGCTCGTTTTCTCTCATCGCTTGCTGCCTAGCGTTTTTCCAGCCTGGAAATGCTCAGCTGGGAGAGTCTAGATTACACGATAGACCTTATGAGGTCCTGCTGAGGCAAAATCTGGTTCTTCTGATAAGTGTTGTGTCCACGCTGCTTGTGGTCATGATTGGGATGGCGGTTTGTGTCTACAAACCTCTCCGGCGCAGGTGACGAGCCCTCGGGATGAACCGAACGCTACTATGGAGAAGGCTTggttttgaatattaatgagcCGAGCCACACCATTGGACGAGAAGAACGCGACGTCGGCGCGAGCTATTTAATAGTCAGGACGCACCTCTTCGCTATTGGACAGTTGCGTAACAACGTCAGTATGACCTGATTAATATTAACGaacctttgttttgttttttcttcgaAGCTTTAATTCAATACAGTCACGATCTCCTCCTTTAAACCCGAACGCTATTTCAAACACATGcgtattgaattattattatttattttttttacagttttagacTCCTTAAATGTTCACAGTCTGAATATatacgtatttatttttttatttaaatgttattttcatgtatttattgtaaGACGTTCATATGAAAGTCAGACCTCTTGAATACAGCTGCTGAAGTCAATGCCTGAATCAGTGTGAATGTGCTcgtgttcaaaataaataactgcatgCAACAATTTTGTTTAACTATACTTCTGTAGACCTAAAGTGTACTGCATTCTCACGAAGCTGGCATCCTttcaaatactaatatttaaaagtacTAATATATACAGTAGCCCTCTAATATATACAGTTCAGGGGTAAATAAGATGCAAGTAacatctttttatcttttttcttgAGCGTGTAAGGTGCCATAGTACAAGAATTATTAGCATATTTAGACTTCCGTCACATTTGCTCTAAACTTCAGTATTTCTATTCAGTAGCCTGTCTGTTTAAGTGTCCCTGAGTCAACTTCTTTTT

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling

RNA

RNA id representative length rna type GC content exon number start site end site
TU49417 True 1045 lncRNA 0.40 2 5896128 5897353

Neighbor

gene id symbol gene type direction distance location
git2a git2,git2a,LOC107595928,LOC107752141,LOC107597287 coding downstream 11964 5859279 ~ 5884164 (-)
gltpa gltpa,gltp,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding downstream 46489 5843678 ~ 5849639 (-)
trpv4 trpv4,LOC107752140,LOC107741238,LOC107654595,LOC107672638 coding downstream 53131 5820352 ~ 5842997 (-)
mmab LOC107752154,LOC107597358,LOC107654603,LOC107672637,LOC107741242,LOC107595926 coding downstream 224999 5668793 ~ 5671129 (-)
kctd10 kctd10,LOC107597295,LOC107595924,LOC107672630,LOC107752136 coding downstream 243099 5648255 ~ 5653029 (-)
slc6a4b slc6a4b,LOC107654599,LOC107597334,LOC107595929,LOC107672619,LOC107741230,LOC108434249,LOC106580268 coding upstream 1542 5898895 ~ 5909991 (-)
trnak-uuu_104 NA coding upstream 58946 5956299 ~ 5956371 (-)
foxd1 foxd1,LOC107598200,LOC107718663,LOC107700903,LOC107596217,LOC107757501 coding upstream 189448 6086801 ~ 6089556 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107596806,LOC107718646,LOC107700928,LOC107596181 coding upstream 198804 6096157 ~ 6099701 (-)
enc1 enc1,LOC107655934,LOC107757521,LOC107570861,LOC107700930,LOC107596864 coding upstream 334913 6232266 ~ 6243818 (-)
G33446 NA non-coding downstream 211844 5679683 ~ 5684284 (-)
G33434 NA non-coding downstream 241364 5654080 ~ 5654764 (-)
G33423 acacb,LOC107752147,LOC107654593 non-coding downstream 275423 5618265 ~ 5620705 (-)
G33409 LOC107684993,LOC107597297,LOC106585658 non-coding downstream 293924 5601409 ~ 5602204 (-)
LOC122344984 LOC107597340,LOC107752133,LOC107684988,LOC107672606 non-coding downstream 298499 5574164 ~ 5597629 (-)
G33542 NA non-coding upstream 48636 5945989 ~ 5946874 (-)
G33544 NA non-coding upstream 55923 5953276 ~ 5959213 (-)
G33549 NA non-coding upstream 71889 5969242 ~ 5982803 (-)
G33610 NA non-coding upstream 274791 6172144 ~ 6172412 (-)
G33612 NA non-coding upstream 276494 6173847 ~ 6174113 (-)
G33175 NA other downstream 1273070 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 1703047 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 1997550 3878650 ~ 3898578 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other downstream 2143364 3744675 ~ 3752764 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 2935951 2951462 ~ 2960177 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 926818 6824171 ~ 6826182 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other upstream 1025493 6922846 ~ 6943203 (-)
G33998 LOC108444092 other upstream 1484993 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 1809617 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 1821212 7718565 ~ 7721758 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030959 NA non-coding NC_007116.7 CM002889.2 19960680 ~ 19963556 (-)