G33544


Basic Information

Item Value
gene id G33544
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5953276 ~ 5959213 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU49429
CTTCCTCTTAGAATATATTTAGCACATGGAGAAATAAACAAGATTCAGTGCAGGAGAATTATTAACACCTGCTCACTTCAGATCACATAAATTATCCTGAGTGTTGAGAACACAGAGGTTTGTACTTTCATCTGCTTTACTATTTTTCCTTAAATGGTCACTTTTGGCCTTGTGTTACAGATCATGAAAAATGCTACTTGCGATTTGATACACTTTCTGATTGCACCTCACTGTGGATCCGACAAAGGTTTCAGACCCGTAGCTGTATTCGTTTAATCATGGGATCAATACTTCCTTGTGATTACAACCTGTCATACAGTACCATAATATTGAGATCTGTAGCAGAGGAGTGTGTTTAGATGATGAAGAAGcacaatgtacattttatacaacAATTTCatcgtgaaaaataaataagagcactgatattttcatttctttgcgTGGATATTAGTGTCCATTGAAAACCATGTAGGCAACGACACCAAAGTTAATAATATAGATTCTctctatataataaatatagcatGTATTTTTCTGTACAGACAAACAGCAAGAATACATCGAGCAGACAAGGCCTTGTGGTAGTGATTGTGAGTTGTCCCgggccacaaacacacacacacacacacacacacacacacacgcactctgaCACAAACatcaaatctaaaaaataaaacctaatgcCAGATATTCATAGGATGGCTGAAAACGTGACACCAATGCACTGAAACACAGTACTGACTCAAAACATGAAAACCCAAATTATTATTCGCTTCTGTAACGCAAAAAACGAAACGTACGGACGATATGTTCTGCTCTAAATCTAATACCTAGAGGCATTCCTTGATAATGTCCAATAATATACTGTGTGTGATACAATAACCTGATCTGATTCAGTGAAGCAGCTCACAGTAAACACACCGACTCGGAAATAAGCAGGTTACAGAGAAACACATGCGGAAGGTCAGTCGACTGAAAGCACAGCGCCCTCTACTGCTACAGTTGTACACAGAAAAATCTACGTCATATTAAAAGTGGCACAtcagaaaaataacaaagagTGCAGGTCATACAGAAGCCCTAAGGAGGAGGTCACACTAGATTTTAAGCGTGTCAAATCATCCCTATTTCCCATATCCTCATGAGTATTTTCCACATGTTATAGCATAATTGTTGCTATTGTGTCTTGACTTCTAAAGTACCGTGTGATACTGAATACTGGAATATTGATGctgaaattatttcatattgttattgttattgtatagCAGTACTGttattactgtacttttgatcaaatccGCCTTGGTGTGCGTAAAAACCGTAAAAATCGAACAAACCAAAAAATCCCAAACGTTTGAACGGCAATGTACGGAAGTGCCCTCTCTATAAGTGAAAGCAAATGGAGCACGAAATCTAGTGTGAGCACCTCTTTTAGCAGTAAAACGCACCTGACCTGAACTCCTCAACTATTGTTCTAgttcaaaacctagtgagccgCCTACATAGGCAGCATTTTTTAAGGCATCACAGGCACACTTCTGCAACATCCTGCCGCTTTCTacgatgttttttttgtcaaatcgCATCACACGAATCAAGAAAACGTTTATAAACGCTTGTTTTCACCGACAAGCATCAATAAAAGTTGGAATCTGATTTATACAGGCTTTGCgcgtgttctgtgtgtttgGGTGTCGACGTCAAATCAAACTGGAAGCTAACCAGTCACGTCTGATGTTCAGTTTCAGTTTCTGTAGGCATTAGACAGCAagacagctcactaggttttggaacggaGCCTGTGAGTCACTAGCGACTGGTAATCCTGACTGCCGTGTCAAACAGGGAATGACCACTCATTAGCAGCATCTGCTTATAAAATCGTATGCGCTATAATGTTCAGTAAAACCTGATTAAAGAGCCAGACGACTCTTAAAAATTGCACACTGACCGATTGCCAGGCAGATCAAGAAGTTTGGCTTTTTAAAACGTTACCGTATGCTTGAAGCTCATTAAGCTTTGGCCAAATGTTGTCTATTGTCTTGTAGCGAGGGCTGACGGGTTACACCGCGAACACGACAGAGGTGAGAGGTCGCAGCGTTACTTGTTCTCTATAAGCGTCTGCACTTTGCACACCAGGTCTCGAGCCAGAGTCAGAATTTGCTTGATATTGTGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49429 True 2187 lncRNA 0.40 2 5953276 5959213

Neighbor

gene id symbol gene type direction distance location
slc6a4b slc6a4b,LOC107654599,LOC107597334,LOC107595929,LOC107672619,LOC107741230,LOC108434249,LOC106580268 coding downstream 43285 5898895 ~ 5909991 (-)
git2a git2,git2a,LOC107595928,LOC107752141,LOC107597287 coding downstream 69112 5859279 ~ 5884164 (-)
gltpa gltpa,gltp,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding downstream 103637 5843678 ~ 5849639 (-)
trpv4 trpv4,LOC107752140,LOC107741238,LOC107654595,LOC107672638 coding downstream 110279 5820352 ~ 5842997 (-)
mmab LOC107752154,LOC107597358,LOC107654603,LOC107672637,LOC107741242,LOC107595926 coding downstream 282147 5668793 ~ 5671129 (-)
foxd1 foxd1,LOC107598200,LOC107718663,LOC107700903,LOC107596217,LOC107757501 coding upstream 127588 6086801 ~ 6089556 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107596806,LOC107718646,LOC107700928,LOC107596181 coding upstream 136944 6096157 ~ 6099701 (-)
enc1 enc1,LOC107655934,LOC107757521,LOC107570861,LOC107700930,LOC107596864 coding upstream 273053 6232266 ~ 6243818 (-)
gfm2 gfm2 coding upstream 296205 6255418 ~ 6263302 (-)
aif1l aif1l,LOC107718642,LOC107570864,LOC107757519,LOC107596876 coding upstream 306524 6265737 ~ 6281395 (-)
G33542 NA non-coding downstream 6402 5945989 ~ 5946874 (-)
G33533 NA non-coding downstream 55923 5896128 ~ 5897353 (-)
G33446 NA non-coding downstream 268992 5679683 ~ 5684284 (-)
G33434 NA non-coding downstream 298512 5654080 ~ 5654764 (-)
G33423 acacb,LOC107752147,LOC107654593 non-coding downstream 332571 5618265 ~ 5620705 (-)
G33549 NA non-coding upstream 10029 5969242 ~ 5982803 (-)
G33610 NA non-coding upstream 212931 6172144 ~ 6172412 (-)
G33612 NA non-coding upstream 214634 6173847 ~ 6174113 (-)
G33615 NA non-coding upstream 218959 6178172 ~ 6178671 (-)
G33681 NA non-coding upstream 650236 6609449 ~ 6611492 (-)
G33175 NA other downstream 1330218 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 1760195 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 2054698 3878650 ~ 3898578 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other downstream 2200512 3744675 ~ 3752764 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 2993099 2951462 ~ 2960177 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 864958 6824171 ~ 6826182 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other upstream 963633 6922846 ~ 6943203 (-)
G33998 LOC108444092 other upstream 1423133 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 1747757 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 1759352 7718565 ~ 7721758 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G280411 NA non-coding CI01000071 null 726653 ~ 727370 (+)