G33791 (rpl7a,LOC100194725)


Basic Information

Item Value
gene id G33791
gene name rpl7a,LOC100194725
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6949544 ~ 6952310 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU49785
GTTTATTGAGGGCAGCAAAAATTAAGTGAAATACAGCAGGCCAGATTAGAACCTCGCATTTTGAAACACCAAATAAACCGGTTAAAACGTTAACTTTTTGGTTTAGAAATACCGTAAGATCTAAAACAATAGGGAGGCttttgaatgtatatttaaaaaaaaaaaaaaaaaaaaaaaaaagtcaaactccAGCCACTTTGTGggataattttttattattaaacaagacAGCTCAACCCAGTTTAGTAGCCAGCTCCTTGGCCTTTGCTTTCTCAAGTTTAGCAATGCGAGCAGTCGACTTGGGACCCAGGACATTGCCTCCCCAGTGACGACGGATCTGAACAGAGAGAATTGAAACGGGAGAACATTAAAATTACAAGACTGTATAAAAGTGAACCGATCGGCACTACAGGCAATAAAACTGACCTCCTCGTATCTGTCATTGTAGTTGGTCTTGATGGCCTCCACCAGCTTAGCAAGAGCTGCCTTGTCTTCACTGAAggaggaacaaaaacaaaaaggttatAAAACGCATGCCGTGTGTTTGTAATGCCGAATCATGAAATCAAACTGCAAATCATTGTGCTCAGGGttaaaaagctcatttaaaaccACATGGTTGTTCAGTTGAAGAAATTCACACATCATAGCCTCAGGATTTGCAGTGCAGGAAAGAAACAGGAGGGAGTGTTTTACTCACGGGTTGGTCTGTGTGAAGGCAAGAGAGGTGCAGGTCTTTCTGTGCACTAGTCTGCCCAGTCTAGCCTTGCCCTTGACGATGCAGTAGGGGACACCCATCTTACGGCACAAAGCAGGCAGGAACACCACCAGCTGCTCAATGGGATCCACATCGTGAGCGATAACGACCAGCTGTGCCTTCTTGCTCTCCACTAGTGTGGTTACTGTGTTCACACTGCGCGGAGGACTGGTGGCCTCTTGGTGGGCTGGTCGCCTTTTCCAGCAGCCTTCTGTTCAGCACGAGCCAGCAGTCTCCGTTTCTTCTCATGCTTGGTCTCGGGCCTGTACTTGTGGGCCAGCTTGAACAGCTGGGTAGCTGCAGAAAGATTTTAACGTCCCAAATCAGCTCTTAAACAACCAGAATTCCAGGACCTCAAAGACTTAAACTAGtcattaattttacaaaaaccaAACTGAATTAGCAATAATGTACAAAAGTGCATCAGTGATCTTGGTGGAAACTGTCTGCACTGATCAGTCAGATAGCAAATATTCTGTCACATCATCTGCACATTAAAAGTCTGAAGTATTTAGAGGTCAGTCAATATTCTCAACAATTACAATATTAGCATTGGAAAATTTATGTTCATGTTATTGATTTAAAGCTCACTATGGATATCATTAAAACCCATTATGAATCGAACTCTACGAGCATTGTATGAAAGCCCCAGAAAGTCTAAAGTGAATAGCTCACCGGTCTGGCGGTCCAGAGCCTGGGAGAACTGGTTGATTGCAGGGGGAACCTTCAGACGCTTATAGAGGATGGCCCGCTGGCGCTGCAGCCGGACGTAACGTGGCCATTTCACGAATTGGGTCAGATCCCTCTTCGGCTGGATGTCTTGACCTGGAAATTAAAGTGCATGACTTTAAGTTGCATTAGGGTCAACAAACTGCAAGTTGGTTTCCTGACATAAGTGCATCAGCGATCTTGGTGGAGTTGTCTTCAATGCTGTTAAGatagcaaatattcaaaaacatcaTCTGCGCTTTAAAAAGTTACGCTATCAATCTGTGGTTTGGTCATTACTCACCAATGCCAAAGTTCTTGGGCCTCTTCTCAAACAGGGGATTCACGACTTTCTTGGCCTCATGCTTCTTGGCCACTGAAGGGGCTGGTGCCACCTTCTTCCCCTTAGCCTTTTTTCCCTTAGGCTGTGAAGAAATGCATAACACTTCATGAGATGATCCGAAAGGCGCAGAAAGATTCATCAGAAATTTTCATTTCTTGGCTAATGCTCAGTTTTGAAAAGGTGTTCTACAAAAAAGTTCAGGTGAAGAAATTCAAGACATCACTGCAAAAGCCAATACACTAACTTACGAGTCAATTTAGCATCTCAAAGATACAAACTTATTCAGCAGCATCAcattttcactatatatatagtCAGAATATATTTAACTGACTAACAGCTGTGCAATAGCGTACAACAGCAGCACGTTAAGCACTAGCGGTCCAATCCGATTCATTTCGGCCTACAAACAAGCCAGCTAACAGGTTAGCATTCGGGTTGGAACCCATGGTGAAGTTCtcataatagtaaaaatatacaaatatgtcTAGTCAAGGGAGTTCGAATTAAAGCCACTGATAACATTTCACAGCTTACGGCCGGACGGCGCCACAACTCGAGGAGTCAGCGCTGACAGTAAGCA
>TU49791
GTTTATTGAGGGCAGCAAAAATTAAGTGAAATACAGCAGGCCAGATTAGAACCTCGCATTTTGAAACACCAAATAAACCGGTTAAAACGTTAACTTTTTGGTTTAGAAATACCGTAAGATCTAAAACAATAGGGAGGCttttgaatgtatatttaaaaaaaaaaaaaaaaaaaaaaaaaagtcaaactccAGCCACTTTGTGggataattttttattattaaacaagacAGCTCAACCCAGTTTAGTAGCCAGCTCCTTGGCCTTTGCTTTCTCAAGTTTAGCAATGCGAGCAGTCGACTTGGGACCCAGGACATTGCCTCCCCAGTGACGACGGATCTGAACAGAGAGAATTGAAACGGGAGAACATTAAAATTACAAGACTGTATAAAAGTGAACCGATCGGCACTACAGGCAATAAAACTGACCTCCTCGTATCTGTCATTGTAGTTGGTCTTGATGGCCTCCACCAGCTTAGCAAGAGCTGCCTTGTCTTCACTGAAggaggaacaaaaacaaaaaggttatAAAACGCATGCCGTGTGTTTGTAATGCCGAATCATGAAATCAAACTGCAAATCATTGTGCTCAGGGttaaaaagctcatttaaaaccACATGGTTGTTCAGTTGAAGAAATTCACACATCATAGCCTCAGGATTTGCAGTGCAGGAAAGAAACAGGAGGGAGTGTTTTACTCACGGGTTGGTCTGTGTGAAGGCAAGAGAGGTGCAGGTCTTTCTGTGCACTAGTCTGCCCAGTCTAGCCTTGCCCTTGACGATGCAGTAGGGGACACATCGTGAGCGATAACGACCAGCTGTGCCTTCTTGCTCTCCACTAGTGTGGTTACTGTACCCACCTGCGCGGAGGACTGGTGGCCTCTTGGTGGGCTGGTCGCCTTTTCCAGCAGCCTTCTGTTCAGCACGAGCCAGCAGTCTCCGTTTCTTCTCATGCTTGGTCTCGGGCCTGTACTTGTGGGCCAGCTTGAACAGCTGGGTACGGTCTGGCGGTCCAGAGCCTGGGAGAACTGGTTGATTGCAGGGGGAACCTTCAGACGCTTATAGAGGATGGCCCGCTGGCGCTGCAGCCGGACGTAACGTGGCCATTTCACGAATTGGGTCAGATCCCTCTTCGGCTGGATGTCTTGACCTGATGCCAAAGTTCTTGGGCCTCTTCTCAAACAGGGGATTCACGACTTTCTTGGCCTCATGCTTCTTGGCCACTGAAGGGGCTGGTGCCACCTTCTTCCCCTTAGCCTTTTTTCCCTTAGGCTGTGAAGAAATGCATAACACTTCATGAGATGATCCGAAAGGCGCAGAAAGATTCATCAGAAATTTTCATTTCTTGGCTAATGCTCAGTTTTGAAAAGGTGTTCTACAAAAAAGTTCAGGTGAAGAAATTCAAGACATCACTGCAAAAGCCAATACACTAACTTACGAGTCAATTTAGCATCTCAAAGATACAAACTTATTCAGCAGCATCAcattttcactatatatatagtCAGAATATATTTAACTGACTAACAGCTGTGCAATAGCGTACAACAGCAGCACGTTAAGCACTAGCGGTCCAATCCGATTCATTTCGGCCTACAAACAAGCCAGCTAACAGGTTAGCATTCGGGTTGGAACCCATGGTGAAGTTCtcataatagtaaaaatatacaaatatgtcTAGTCAAGGGAGTTCGAATTAAAGCCACTGATAACATTTCACAGCTTACGGCCGGACGGCGCCACAACTCGAGGAGTCAGCGCTGACAGTAAGCA

Function

symbol description
rpl7a Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in brain; eye; immature eye; neural plate; and presumptive neural plate. Orthologous to human RPL7A (ribosomal protein L7a).

NR:

description
ribosomal protein L7a, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49785 True 2391 lncRNA 0.43 3 6949544 6952310
TU49791 False 1770 lncRNA 0.45 5 6949544 6952310

Neighbor

gene id symbol gene type direction distance location
med22 med22,LOC107710756,LOC107691021,LOC107596962,LOC107726295,LOC107693846,LOC107587409 coding downstream 229 6945514 ~ 6949315 (-)
ptges ptges,LOC107710751,LOC107693847,LOC107598231,LOC107691017,LOC107726289,LOC107587481 coding downstream 27925 6917865 ~ 6921619 (-)
LOC122345680 LOC107710746 coding downstream 106817 6840718 ~ 6842727 (-)
LOC122345679 NA coding downstream 109861 6835883 ~ 6839683 (-)
LOC122344933 NA coding downstream 118717 6828115 ~ 6830827 (-)
LOC122345529 surf1,LOC107726301,LOC107693844,LOC107587407,LOC107725413 coding upstream 100 6952410 ~ 6954782 (-)
LOC122344928 LOC107691049,LOC107598263,LOC107723339 coding upstream 67217 7019527 ~ 7042597 (-)
lmo4a lmo4a,LOC107691029,LOC107723366,LOC107597048,LOC107587399 coding upstream 137855 7090165 ~ 7102731 (-)
ccn1l1 cyr61l1,LOC107723346,LOC107691050,LOC107740969,LOC107693831,LOC107587477 coding upstream 153363 7105673 ~ 7109832 (-)
rpl12 rpl12,LOC107587392 coding upstream 169099 7121409 ~ 7123998 (-)
G33768 NA non-coding downstream 91161 6835959 ~ 6858383 (-)
G33738 NA non-coding downstream 101739 6758909 ~ 6847805 (-)
G33683 LOC107588773 non-coding downstream 336489 6611740 ~ 6613055 (-)
G33681 NA non-coding downstream 338052 6609449 ~ 6611492 (-)
G33615 NA non-coding downstream 770873 6178172 ~ 6178671 (-)
G33802 ccbl1,LOC107691018,LOC107731000,LOC107587404,LOC107596979,LOC107726298 non-coding upstream 7965 6960275 ~ 6961261 (-)
G33803 NA non-coding upstream 11645 6963955 ~ 6964175 (-)
G33804 NA non-coding upstream 11950 6964260 ~ 6964511 (-)
G33805 NA non-coding upstream 15417 6967727 ~ 6968241 (-)
G33807 prkaa1 non-coding upstream 17036 6969346 ~ 6970411 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other downstream 6341 6922846 ~ 6943203 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other downstream 123362 6824171 ~ 6826182 (-)
G33175 NA other downstream 2326486 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 2756463 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 3050966 3878650 ~ 3898578 (-)
G33998 LOC108444092 other upstream 430036 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 754660 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 766255 7718565 ~ 7721758 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other upstream 1208567 8160877 ~ 8164026 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other upstream 1459572 8411882 ~ 8414806 (-)

Expression


Co-expression Network