G33806 (prkaa1,LOC107691024,LOC107730998,LOC107693840,LOC107597029,LOC107726302)


Basic Information

Item Value
gene id G33806
gene name prkaa1,LOC107691024,LOC107730998,LOC107693840,LOC107597029,LOC107726302
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6971561 ~ 6971994 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU49812
CTCATAGTCCAACTGCTTCATAGCACGACAGACCTCGCTCATGATATCATTCGGTCTGCTCTGGCTACGGATTCCCAGGTGCCACTTGGCCCGCCGGACACCGAGATGCTTGGACTTTTGGGGGTTGAGCTCATCCAGTGTGTGTCGAGGTCGTGGCTGGGACTCGGTCACCAGGAATGGCACTCTCTCGGGGTGAATCTTCGCGGAGTGGTGCGCGGGCAGGTCGTCTAGGAAGCTGTCCGGGGGGCTGGAGGCCAAATAGAAATCTTTGGCCTCGCTCATAATGCGCCGGTTGTCTATGATCAAGTGATAGGCCACAGCAAGAGGATCCTGGTGATTCCGAC
>TU49813
CTCATAGTCCAACTGCTTCATAGCACGACAGACCTCGCTCATGATATCATTCGGTCTGCTCTGGCTACGGATTCCCAGGTGCCACTTGGCCCGCCGGACACCGAGATGCTTGGACTTTTGGGGGTTGAGCTCATCCAGTGTGTGTCGAGGTCGTGGCTGGGACTCGGTCACCAGGAATGGCACTCTCTCGGGGTGAATCTTCGCGGAGTGGTGCGCGGGCAGGTCGTCTAGGAAGCTGTCCGGGGGGCTGGAGGCCAAATAGAAATCTTTGGCCTCGCTCATAATGCGCCGGTTGTCTATGATCAAGTGATAGGCCACAGCAAGAGGATCCTGGTGATTCCGACTGTGAAGAAAGCAAGGACAAATGAGAGTATACAGTTGTTTGGTAGCAGTGACTCACTAATACAGaccatttcttaaaacatttacctatt

Function

symbol description
prkaa1 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within negative regulation of hh target transcription factor activity. Predicted to be active in nucleus. Is expressed in several structures, including axis; digestive system; margin; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in Huntington's disease; breast cancer; and colon cancer. Orthologous to human PRKAA1 (protein kinase AMP-activated catalytic subunit alpha 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49812 False 344 lncRNA 0.57 1 6971651 6971994
TU49813 True 434 lncRNA 0.53 1 6971561 6971994

Neighbor

gene id symbol gene type direction distance location
LOC122345529 surf1,LOC107726301,LOC107693844,LOC107587407,LOC107725413 coding downstream 16779 6952410 ~ 6954782 (-)
med22 med22,LOC107710756,LOC107691021,LOC107596962,LOC107726295,LOC107693846,LOC107587409 coding downstream 22246 6945514 ~ 6949315 (-)
ptges ptges,LOC107710751,LOC107693847,LOC107598231,LOC107691017,LOC107726289,LOC107587481 coding downstream 49942 6917865 ~ 6921619 (-)
LOC122345680 LOC107710746 coding downstream 128834 6840718 ~ 6842727 (-)
LOC122345679 NA coding downstream 131878 6835883 ~ 6839683 (-)
LOC122344928 LOC107691049,LOC107598263,LOC107723339 coding upstream 47533 7019527 ~ 7042597 (-)
lmo4a lmo4a,LOC107691029,LOC107723366,LOC107597048,LOC107587399 coding upstream 118171 7090165 ~ 7102731 (-)
ccn1l1 cyr61l1,LOC107723346,LOC107691050,LOC107740969,LOC107693831,LOC107587477 coding upstream 133679 7105673 ~ 7109832 (-)
rpl12 rpl12,LOC107587392 coding upstream 149415 7121409 ~ 7123998 (-)
LOC122346221 NA coding upstream 149728 7121722 ~ 7121849 (-)
G33807 prkaa1 non-coding downstream 1150 6969346 ~ 6970411 (-)
G33805 NA non-coding downstream 3320 6967727 ~ 6968241 (-)
G33804 NA non-coding downstream 7050 6964260 ~ 6964511 (-)
G33803 NA non-coding downstream 7386 6963955 ~ 6964175 (-)
G33802 ccbl1,LOC107691018,LOC107731000,LOC107587404,LOC107596979,LOC107726298 non-coding downstream 10300 6960275 ~ 6961261 (-)
G33787 prkaa1,LOC107587403,LOC107693840,LOC107691024,LOC107730998,LOC107597029 non-coding upstream 3089 6975083 ~ 6977662 (-)
G33809 LOC107597012,LOC107691025,LOC107730999,LOC107587402 non-coding upstream 10432 6982426 ~ 6983873 (-)
G33810 kank1b,LOC107730999,LOC107597012,LOC107691025,LOC107587402 non-coding upstream 14006 6986000 ~ 6986219 (-)
G33811 NA non-coding upstream 16032 6988026 ~ 6988772 (-)
G33788 NA non-coding upstream 26366 6998360 ~ 6999384 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other downstream 28358 6922846 ~ 6943203 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other downstream 145379 6824171 ~ 6826182 (-)
G33175 NA other downstream 2348503 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 2778480 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 3072983 3878650 ~ 3898578 (-)
G33998 LOC108444092 other upstream 410352 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 734976 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 746571 7718565 ~ 7721758 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other upstream 1188883 8160877 ~ 8164026 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other upstream 1439888 8411882 ~ 8414806 (-)

Expression


Co-expression Network