si:dkey-220k22.3


Basic Information

Item Value
gene id si:dkey-220k22.3
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7718565 ~ 7721758 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU50440
CATTACATTCGAGAACTTCATCCGGTACAAGAGGCATTTCTTGCGCGAGACTCAAGTTATTTGAACTTCTTGAGGAGCAGGCATGGATACAGCGCGGGCAGCCAGGGCGCATATTATCTGGACATCGATAGCTTTGGTCTTTATTTTAATCGCGTCGTGCTTGACTTATGTCTTCATGTCCAAGGTGCACGGATGCCAAGCAATTAGCACCGTGAATGTCTCTGCAATAGAAAGCATGTTCTCCAGAAAGAGTTTCTCTCGGGAACAATGGCTTTTAAcagCTCGGGActacaatacaaataattacTTGATATGGGAGGATGAGTGGCGCGGATACACGGACTTGCATGAGAGCATTCTGGACCAGAGCAACGTGTCGATGGTCATTCAAGAGAAAGGCGTCTACCTGGTCTACATACAAATTAACT
>XM_043239903.1
CATTATGATTAAAGATCTAaacctttgtgtttttaaacgCTGTTCACCGTCGCCTCGTTTTCGTAGCAGTAGGTTTTATTGACTAATCTGATAAAAGATCGAAACGCTGCTAATAACTCGAATGAAACAAGATGCTGGCTTAGATTACGAGATATCAGTGAAATGTATGAAAGCATGCTTTATAAAGTGAAAGCTACGAGTTCTCTGTTACCATGATCGCATCCACCCTCATCTCACCCAAAGGTGATGCGGAGTTAATAGCGCACCGTTGAGCGCGTGGGAGAGACTCGTATCTCATTACATTCGAGAACTTCATCCGGTACAAGAGGCATTTCTTGCGCGAGACTCAAGTTATTTGAACTTCTTGAGGAGCAGGCATGGATACAGCGCGGGCAGCCAGGGCGCATATTATCTGGACATCGATAGCTTTGGTCTTTATTTTAATCGCGTCGTGCTTGACTTATGTCTTCATGTCCAAGGTGCACGGATGCCAAGCAATTAGCACCGTGAATGTCTCTGCAATAGAAAGCATGTTCTCCAGAAAGAGTTTCTCTCGGGAACAATGGCTTTTAAcagCTCGGGActacaatacaaataattacTTGATATGGGAGGATGAGTGGCGCGGATACACGGACTTGCATGAGAGCATTCTGGACCAGAGCAACGTGTCGATGGTCATTCAAGAGAAAGGCGTCTACCTGGTCTACATACAAATTAACTTCCAACTCCACCCGCAGAAGGACAAAACGTCTACCGAACTCAAAATTTTAGTGGATTTCGGTTTTGATGGAAAGAAGGAGCTGTATTCAGCCGCGCATGACACTCAGAATGTGAGTGTCCCGTATCATGAAGCAAAGCTCAACACTTTCCTTCTGATGAAAATGCAGCCAACAAGCCAGTTATCAGTGAAAGTGTTTCCGAGCGAATGTGTGAACTACACGCCGCGACCCTTTTCCAGTTTTATCACTATCGTAAAATGGGCAGACAACTGGTAGGCTGTGGCATATATTGCAGACGCCATTGGCTTTCCAGGTGAAAACTATATCCATGTCCAGTTTTTTCGAGTGGCTCTTCTTATATTCTTGCTTTTAAGTGTGACATTTCGGAAGAATGCGGTCTCGAGATCAGCTGCTAGAACACCTGAGATTTTCCAGCTGTTGTACTAGGAAATGCTCGCTGACATTAACAAGGATTGCGTGGGGGGTTGTGATACTTTcttggtgttttttcttcttcctttcgaAATATGAAGATCACATCTCATGATCTTCTCAGAAGCATGACACATTTTCCTCTCAACAGATATACGAgttaggtttgttttgtttcagtttttatgactcaagatgaaaaaaaaagggcacGATATACTGTTAATGAGCACTGGCTTTGAAGATTCTCGTGTATTACGTACATAAAAGATGTCATAGGTGCCTGCAAACAAACACCGTTTTACAAAACAGTTGTAAGCTAATTCTGAGCAAGTgggtattttttattagtaaaatgcaTCTTCCTGTATATACAATCATACAGTTTTTTAATCATCGACAGCTGAATGTAAAAACCTCATAACACCCTGTCTTTATCCAGTGTCAGTGTTTGATATAAATGCTCTTTGTATCAAAAGCTATTgagcaatattttattatgtaaataagcCAAGAAAccagcaaatatatatatatatatattttaaagttaatgaAACGTGGTGCCAGTTTTTAGCTATAAGCAGATTCATCCAGCCAcagaagcatttatttattgatgcatGGATGTCATGGAAACGTTTTCTTATGAGGGTGACTAggggtgaattttttttttttttttttttttttttttttt

Function

NR:

description
uncharacterized protein LOC110523247

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50440 False 428 TUCP 0.46 4 7719696 7721463
XM_043239903.1 True 1854 mRNA 0.40 4 7718565 7721758

Neighbor

gene id symbol gene type direction distance location
slc25a25b slc25a25,slc25a25b,LOC106570619,LOC107712386,LOC107587368,LOC107664407 coding downstream 78315 7624124 ~ 7640250 (-)
uap1l1 uap1l1,LOC107598388,LOC107737483,LOC107681846,LOC107712387,LOC107664408,LOC107587443 coding downstream 95093 7619097 ~ 7623472 (-)
zdhhc12b zdhhc12b,LOC107597310,LOC107712389,LOC107737479,LOC107681847,LOC103035983 coding downstream 99601 7613889 ~ 7618964 (-)
iscub iscub,iscu,si:ch211-191d15.2,LOC102784710,LOC100705178,LOC103373105 coding downstream 119670 7596285 ~ 7598895 (-)
ungb ungb,LOC107681856 coding downstream 157454 7558279 ~ 7561111 (-)
si:dkey-220k22.1 LOC107664520,LOC107597375,LOC107748505,LOC107664410,LOC107712354 coding upstream 4203 7725961 ~ 7780945 (-)
camkk1a camkk1a,camkk1,LOC107587369,LOC107664416,LOC107712376,LOC107664519 coding upstream 72992 7794750 ~ 7829765 (-)
atp2a3 atp2a3,LOC107597397,LOC107664518,LOC107712375,LOC107587360,LOC107748501,LOC107664409 coding upstream 143379 7865137 ~ 7911974 (-)
zzef1 zzef1,LOC107712353,LOC107748500,LOC107664397,LOC107598082,LOC107664510 coding upstream 216413 7938171 ~ 7973561 (-)
ankfy1 ankfy1,LOC107597410,LOC107664513,LOC107587357,LOC107664399 coding upstream 254889 7976647 ~ 7992530 (-)
G34248 NA non-coding downstream 6071 7712043 ~ 7712494 (-)
G34214 NA non-coding downstream 74336 7642970 ~ 7644229 (-)
G34025 LOC107587446,LOC107597252,LOC107723353 non-coding downstream 140353 7572160 ~ 7578212 (-)
LOC122345617 NA non-coding downstream 219777 7495614 ~ 7498788 (-)
LOC122345654 NA non-coding downstream 258454 7450377 ~ 7460111 (-)
G34260 NA non-coding upstream 139717 7861475 ~ 7861829 (-)
G34265 NA non-coding upstream 214753 7936511 ~ 7937371 (-)
G34275 NA non-coding upstream 291589 8013347 ~ 8013551 (-)
G34276 NA non-coding upstream 291928 8013686 ~ 8013937 (-)
G34290 NA non-coding upstream 378728 8100486 ~ 8100700 (-)
LOC122345606 LOC107712378 other downstream 6741 7706970 ~ 7711824 (-)
G33998 LOC108444092 other downstream 321412 7382346 ~ 7397153 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other downstream 775362 6922846 ~ 6943203 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other downstream 892383 6824171 ~ 6826182 (-)
G33175 NA other downstream 3095507 4622490 ~ 4623058 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other upstream 439119 8160877 ~ 8164026 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other upstream 690124 8411882 ~ 8414806 (-)
timm8b timm8b,LOC107717885,LOC107598437 other upstream 707942 8429700 ~ 8431586 (-)
LOC122345093 NA other upstream 952471 8674229 ~ 8677718 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other upstream 1207712 8929470 ~ 8930053 (-)

Expression


Co-expression Network