LOC122345606 (LOC107712378)


Basic Information

Item Value
gene id LOC122345606
gene name LOC107712378
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7706970 ~ 7711824 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU50458
GCcgttttcctttttctcttaCATTCCAAAGTGCCCTTTTTTGGTGGAGGCAGGGTTTTTTTCCCTTCAATAAATCAATGCTATTTTCACCCTTTGCGTCGGTCTCTATTTTCTATCTTCAGGCATTTAGCCAAGGAAACATATTTAATACCTGAACATACTTAAAATTAGTTATGACTAAAATCTTGTTGAATCCACTCAAACTGTCAGTAAACCTCATAACTCCAACCCCTTCAACTCGACAGAAGGGTTACTTTACCATAATGCCACTTTTGATGGGGGACCCATTAAATGCGATTGGGCTAGTTTTGGGTAGAAA
>XM_043239899.1
tggatgaacttaaCTGGCCTacagagtcctgacctcaacccgatagaacacctttgggatgaattagagcagAGACTCAAAGCCAGGCCTTCTCATCCAACATCAGTgcgtgacctcacaaatgcgcttccggaagaatggtcaaaaattcccatgAACACACtactaaaccttgtggacagccttaCCAGAAGAGTcgaagctgttatagctgcaaagggtgggTCGACGTCATAGTGAACCCTATGGACTAGGAAAGGGATGTCACTTAAGtcaaatacttttggcaatataatgtattttgtcTAATTTGCCACGATCTCCCTGCTGCTCTAATGGGTTCGGTGCACAAGATGGCACCGGTGAGCTTCGGCAACAGGAGTGCGTGCATACTTCCAGTCTTGCGTCTTTCGCATTTGCTGTAAGAGGAAACGTCATACGAAACTTGCCTAGATGGGTAAAATTGATGTTTTTCGAATCAAAATGTTGGtagttgtatatttaagaaatgcgAAAACATCTTCATATTATTGCGTACCTCTGTTTGAATATTCATTAAGATACAACGTGAAGATTGCTCAGTCCACGGGGATCTCATGTACATTTTTGGAGTCTCATTCATTAGTTTCATTCATTTACCCAACCCAAACATATGTGCGTTTCAAATGTTAACATTCATAGTATAGTACTAATAGCGATGTagatattttattgcaattgaagtgatattatagatattttaaacGGATATAGAAGGTAATGTTTGGATTCCGGTTCTCTGCACTGGCTTTTAGCACAACCGGAAGTATTTATGCACACACTCGCTCGACCAAATTCCAAGATGGCGGAGATATCCAACTAGCCCGTAGTAGTGAGTGGGCACTAGGGCAAAAGGAAACCGATTACATTACACCAATTTTAGCTTCATTTCATTGGCTTCCAGTTCAGTTTAGAGTTCATTTCAagattgttgtttgtttgtttttttaagctctTATGGTCAAGCCCCATTGGATCTTAAATGTCTTCTAATGTTTACTTGTTCATCCTCTAGATCTCTTAGATTTGTTGATAAGGCTTTTAGTTGTACCTCACccacaatttaaaaactaaGAATAAGGGCTTTTTTGATTGCTCCCCCGTCTTTGGAATCAACTGCCACTACACATCCATCTCGCACCatcaattacaatttttaaaatgaagctgAAAGCTTATTTTTACtctgaataattttaatttaggaTCTTATTGTTACTTTACATATGTTTTGTTGTCTAAATGTTTCTGAATGCTTTGTTTGTCTCTATGTTCAGCACttccctgctaaaaaaaaaacattacagaaatTCAAATAGTTGCCAATAAAATGCCATTGTGAActataaggttttttttaccagaaaaaccattacaaaattccTTCTTGTAGTGTGTTTTGGCCACTTTTCCAATAGACTTTAACATTCCACCATTAGAATCACATACCAGTAGACCATTATACTTTCCATTTATAACCAGTACATTATGAGCATTAAATCTATTTTCTGTTGTGATTTGGGCAGGGTTCTATTGAGGTGGGTTAGCTTTGCAGAGCACATGCcgttttcctttttctcttaCATTCCAAAGTGCCCTTTTTTGGTGGAGGCAGGGTTTTTTTCCCTTCAATAAATCAATGCTATTTTCACCCTTTGCGTCGGTCTCTATTTTCTATCTTCAGGCATTTAGCCAAGGAAACATATTTAATACCTGAACATACTTAAAATTAGTTATGACTAAAATCTTGTTGAATCCACTCAAACTGTCAGTAAACCTCATAACTCCAACCCCTTCAACTCGACAGAAGGGTTACTTTACCATAATGCCACTTTTGATGGGGGACCCATTAAATGCGATTGGGCTAGTTTTGGGTAGAAATTGGGCGGGATTTGCTGTGAAAACCCTGACAGCAGCAGAATGAAGTCTTGCAACTGTAAACCCAACCCCCCcctttttttaacaattgcATAATCATTTTTACGCAAGAAACCATAAAggcttatattttatgtatttgaggTCTGAGACAGGTGACAcctattttgttaatatttaatattatatatcatattgtATAGTCGCTTGATTAATGATTATGCTGTTAATATTCACATATTTGCTACAGCTGGCTAATTTTTGAATCTAGTTCGTCATCTTCAAACGTATAAAGGAAGTAAAGCATGGTTTTACTAAAGTAATGTTGtagtaactaaaaaaaacattacagaatCAGATCACTGtgatatcatattttaataGGTTTAGGAGAGGAGAGCTCTGGCACAATACAAACTTCTCACTGTATAAAATGCGGATGAGATTTTCGAAAGACCCTGGTCTTCCAGAGAATCGAGGCGGATATATGTTGGATatgctggggtttttttgggtttttttgactGGAATTGTGTTGGACATTGTTTATATCCCATTGCTTTACCTCCCCTCTTATAAATGACATACCCACACGATAaccaaatacaaatacattcataaaacagaatagttaaaaatatatatattcaaacataTTTGTATTGAACTTGTGTAGAGACCAGAGGATCACAGTAAAGTCATAAACATGGCTCACAGAAGATAGCTGTTGTAATTAGATTTAAGGAAGCcctgtatttactgtatatatctgtataattattataactgTTATTgataagaaataaatgtaacgtttttgatactgtaattttatgttttgcttatttttttttcagttttttttagcaagTCTATTCCCGGTTCTGCTGTGATAAATCTGATGTAGCCTATAAATAAACCTTACTTACATAGTAAACAATTATGACTCACGCATCCGCGCGTATTTATCTGCCCACTCGTCATTAAAGAAATGCCCAAGGACGCAGTTCACACAAGTGAACAAGGGAAACCTCTAAACAAAGCGACTACCTCCGGATTGATGTAACGACTGCCTGACTTAAGCCGGATGTCTGGCGCGTTCGGACACGCAGAACCTCGATGAGTAACAGTGTCTCCCGAcggaaggagagagagggaggtcTGTGCTCAACGTCACGTgaactataaaatataacagcTCCACTGACAGCCCGACAAAGCAACGTGGATGCGTTATCCGTGGACATGGCTCAAGCTGAGGCGTTCGAGTTTGGCGTGGAGCAGGGACAGATGCTGCAGGTGTTGATGAGACACTGTCAGACCATGAAGCGTCAGGAGACGCGGCTGCGCGTGGCCACCGCGCTGCTGCTTGCAACGCTCCTCGCCACTTTTGTGTGGATTCAGCAGCTAAACACTAAGGAAGCGTTCTCGGGCGCCCGTCCAGAGGCTTTAAAAACTACAGATTCACCAAGAAGTCACTCTGTGCATCTCGAACCTCTTAGACAGATGGACCCTTGTTCGGAACAGCAGCCCATCGAGTGGTTGGAAGTGAGTGATGGGTACAACTCCGAAAACTTCAAGCTGGAAAACCGAACAGTCCTCCACGTCTCCTCGAAGGGCCTGTACATCATCAATCTGAGGATCTCTTACCGTACAGCCTATAACCTGTGCGAGCCTGATACAGTTTCGACTTTAGTCGTCAATGTCACGCAACATCACAGAAACTAtccaagagagagagagcttgtaAGTGCTACAGAGACTATGATTTGTAGAGATTGTTTGAGCCAGTCGATCACTGTGAATCGAGCAGTCGGGTTAGAAGCTGGCACGATTCTCAGGGTGAGAATTAACCAGAATAGTTGTAAGTTTGTTAACTGggttaaaaacagtcatttgGATGTCACTTTTCtctagaggtttttttttttttttgattgaaaaaTTAGTTTTACTTCCTAATGGAATGAATGTATATTTGAGATTAGTTAGAAACGGCATtaagtttactttttaattaccTATTATTTAGGTGCTctaagaaatacaaaaaatgtttaaccaTTTGGTTGATATTTTCAGGTTTAATGAGAGGTTTACTCTGATTCTTTGTCAAAACTGTTATTAAATAACAAGACTACCCATGTACTATCCTCATGGGGCCGATTTTGAATTTAgttattaagtgttattgtgacaGCCAAATACACCAAAATGTTGGTAGCAGGTGAAATTATGTGCatgttttatgttaaaactttttaaatgcgCATTTAAGAACTGATTCATCACGAGTTGTTTGtccttttgattttaaaaatcaagtattatttttacacaatttagAGCCCATACTGTTCATTGCATTCACCTCTAGGCAGCAATTGTTTTTATGCTTCACTCCTAAATCTGTTACttgaaattcaaataatgtttttacatatatttgtgtcaaatattcaaattataatGCCTCTGTCAACGATTTACTACACTAAAGGTATATCTAGAaacaacaatgcaaaaaaagtctTCATTGCCTGATAATACTCTTTGATTACTGGATCAAGAAACGTTCTGCATTTATTCTGTActgcatgaataaaaaaaaaataaaaaaacttgtcAAAGAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107712378

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50458 False 319 lncRNA 0.39 1 7709905 7710223
XM_043239899.1 True 4550 mRNA 0.38 3 7706970 7711824

Neighbor

gene id symbol gene type direction distance location
slc25a25b slc25a25,slc25a25b,LOC106570619,LOC107712386,LOC107587368,LOC107664407 coding downstream 66720 7624124 ~ 7640250 (-)
uap1l1 uap1l1,LOC107598388,LOC107737483,LOC107681846,LOC107712387,LOC107664408,LOC107587443 coding downstream 83498 7619097 ~ 7623472 (-)
zdhhc12b zdhhc12b,LOC107597310,LOC107712389,LOC107737479,LOC107681847,LOC103035983 coding downstream 88006 7613889 ~ 7618964 (-)
iscub iscub,iscu,si:ch211-191d15.2,LOC102784710,LOC100705178,LOC103373105 coding downstream 108075 7596285 ~ 7598895 (-)
ungb ungb,LOC107681856 coding downstream 145859 7558279 ~ 7561111 (-)
si:dkey-220k22.1 LOC107664520,LOC107597375,LOC107748505,LOC107664410,LOC107712354 coding upstream 14137 7725961 ~ 7780945 (-)
camkk1a camkk1a,camkk1,LOC107587369,LOC107664416,LOC107712376,LOC107664519 coding upstream 82926 7794750 ~ 7829765 (-)
atp2a3 atp2a3,LOC107597397,LOC107664518,LOC107712375,LOC107587360,LOC107748501,LOC107664409 coding upstream 153313 7865137 ~ 7911974 (-)
zzef1 zzef1,LOC107712353,LOC107748500,LOC107664397,LOC107598082,LOC107664510 coding upstream 226347 7938171 ~ 7973561 (-)
ankfy1 ankfy1,LOC107597410,LOC107664513,LOC107587357,LOC107664399 coding upstream 264823 7976647 ~ 7992530 (-)
G34214 NA non-coding downstream 62741 7642970 ~ 7644229 (-)
G34025 LOC107587446,LOC107597252,LOC107723353 non-coding downstream 128758 7572160 ~ 7578212 (-)
LOC122345617 NA non-coding downstream 208182 7495614 ~ 7498788 (-)
LOC122345654 NA non-coding downstream 246859 7450377 ~ 7460111 (-)
G33990 NA non-coding downstream 311738 7366250 ~ 7395232 (-)
G34248 NA non-coding upstream 219 7712043 ~ 7712494 (-)
G34231 NA non-coding upstream 5749 7717573 ~ 7760165 (-)
G34260 NA non-coding upstream 149651 7861475 ~ 7861829 (-)
G34265 NA non-coding upstream 224687 7936511 ~ 7937371 (-)
G34275 NA non-coding upstream 301523 8013347 ~ 8013551 (-)
G33998 LOC108444092 other downstream 309817 7382346 ~ 7397153 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other downstream 763767 6922846 ~ 6943203 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other downstream 880788 6824171 ~ 6826182 (-)
G33175 NA other downstream 3083912 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 3513889 4144856 ~ 4193081 (-)
si:dkey-220k22.3 NA other upstream 6741 7718565 ~ 7721758 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other upstream 449053 8160877 ~ 8164026 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other upstream 700058 8411882 ~ 8414806 (-)
timm8b timm8b,LOC107717885,LOC107598437 other upstream 717876 8429700 ~ 8431586 (-)
LOC122345093 NA other upstream 962405 8674229 ~ 8677718 (-)

Expression


Co-expression Network