G34578 (LOC107715750,LOC107587423,LOC107709820)


Basic Information

Item Value
gene id G34578
gene name LOC107715750,LOC107587423,LOC107709820
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8925670 ~ 8927031 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU50962
GCTCATTTCACCTTTGCATGTGTGTTGAAGAGTTCAAACAGGGCCATGGCCAGAGGCTCTACCCCGATATGTGCGCGCTGGTACTCTTGAATGTAATAGCTCAtggtctgtctctctgtctctgtcagaAGCATGTACGCCTGCTCCTCCAGTGAGCTCCAGGCTCCTGCACGTACCGCTCCGACCGCTGGCACGACACCTTTACAACAGATTGACTGCACACGagagaatagaaaacaaaaaggggTGTGTTTACATATACAATGTTGTAAAGACGTGTAGAATCTCTTATGTCTGCATCGCAGATGGCTTCATTTTTTCTTCAGAGTTttgttactaaataaatatttttttgaattaattgatttatttaatttagtatcATTGAGATTATAGTTTTAATTGATAAcataatatcttttatttttatactttatactttcattttaagttcagttgaaatttaaatattttttagggATTTTTGGTTTCGTTTTAGTTAACCTTTTAACTAaactgttattataatattttaaattaatattcctttttcatttcagaacaatttttttctgtgtgtttgtcccttttattgcatttttttgtttcaaaattgtttttaattttaataatgtttttgattttaattttaattggaattagtttttttaattttaaaagcaattttattgcgtgtgtttttttttttatatatatttttgggttCAGTTATATCAGTATTATTAagttgctaaataaaaacaataaatgctgctttacaTTAGCTGAatttattacagtttcaaaTAACACctttgtgctttagttttagttaactataataaccctgaaaCAGTTTCATAGTATTATTTAtgcagttgcatttttttttacttctactcacaaattagcattttagtcACTAAATGTTTgcttattaagatttttttagatcattttgGATGATGTTATGGTGTCTTGGAAGCTTGTCTGAAACCCTTAGGAGATATTTCGTATTAAAACGCTACCTTTGAAGTCAGGGAAAAGCAGCTAGCTTCGGTTTTGGATACAGCCAGCgctacttatttattttcataaaggaAAATAAGCAAATAGTGGCATGTAGTGCTACAGTGGTATAAAACAGTTGTGCAATCATTAGTCACACCATGTAGTTGATATGAACTGATGTAATGTGCATGTTCAGGTCAGTGTGTGGGCAGCAGGCACTCATGGGAAAGAGAGAATAGCAGCTGCAGGACTGCATCACTGAGACCTCACCAGCCAGCCATGTCTAATATGTAATGTTACATACCCTAGGGTAACaaactctctctccctctctctctctctctctctctc

Function

NR:

description
PREDICTED: whirlin-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50962 True 1362 lncRNA 0.33 1 8925670 8927031

Neighbor

gene id symbol gene type direction distance location
dpp7 dpp7,LOC107709692,LOC107560239 coding downstream 49172 8871280 ~ 8876498 (-)
tsc1a LOC107709700,LOC107597815,LOC107681228,LOC107690665 coding downstream 281880 8632895 ~ 8643790 (-)
ak8 ak8,LOC107681224 coding downstream 294344 8611512 ~ 8631326 (-)
ddx31 ddx31,LOC107597806,LOC107741444,LOC107587329,LOC107690663 coding downstream 316394 8594064 ~ 8609276 (-)
si:ch211-215c18.3 si:ch211-215c18.3 coding downstream 351087 8569849 ~ 8574583 (-)
stxbp1b stxbp1b,LOC107560235,LOC107587321,LOC107690675,LOC107715760,LOC108423604,LOC108255382,LOC107681214 coding upstream 11223 8938254 ~ 8949378 (-)
LOC122344627 LOC107560223,LOC107711009,LOC107681213 coding upstream 65152 8992183 ~ 8997534 (-)
LOC122345801 NA coding upstream 72460 8999491 ~ 9001555 (-)
trafd1 trafd1,LOC107709840,LOC107681252,LOC107560230,LOC107587319,LOC107715758 coding upstream 74876 9001907 ~ 9008032 (-)
LOC122345922 LOC107560213,LOC107709824,LOC107560217,LOC107709823,LOC107560218,LOC107681212,LOC107715747,LOC107715746 coding upstream 95521 9022552 ~ 9023686 (-)
G34577 NA non-coding downstream 353 8925052 ~ 8925317 (-)
G34575 NA non-coding downstream 8739 8916532 ~ 8916931 (-)
G34574 LOC107709680,LOC107560234,LOC107715750,LOC107690673,LOC107681240 non-coding downstream 20046 8905407 ~ 8905624 (-)
G34573 LOC107681240,LOC107587323,LOC107709680,LOC107757966,LOC107690673 non-coding downstream 35322 8888986 ~ 8890348 (-)
G34401 NA non-coding downstream 450490 8474979 ~ 8475180 (-)
G34579 NA non-coding upstream 182 8927213 ~ 8927416 (-)
G34582 NA non-coding upstream 5829 8932860 ~ 8933080 (-)
G34583 NA non-coding upstream 6880 8933911 ~ 8934139 (-)
G34606 NA non-coding upstream 61580 8988611 ~ 8991023 (-)
G34607 NA non-coding upstream 64070 8991101 ~ 8991313 (-)
LOC122345093 NA other downstream 247952 8674229 ~ 8677718 (-)
timm8b timm8b,LOC107717885,LOC107598437 other downstream 494084 8429700 ~ 8431586 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other downstream 510864 8411882 ~ 8414806 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other downstream 761644 8160877 ~ 8164026 (-)
si:dkey-220k22.3 NA other downstream 1203912 7718565 ~ 7721758 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other upstream 2439 8929470 ~ 8930053 (-)
vamp5 LOC107594989,LOC107681225 other upstream 288467 9215498 ~ 9220528 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other upstream 410797 9337828 ~ 9402623 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other upstream 1397928 10324959 ~ 10335343 (-)
G35122 NA other upstream 1534177 10461208 ~ 10461709 (-)

Expression


Co-expression Network