vamp5 (LOC107594989,LOC107681225)


Basic Information

Item Value
gene id vamp5
gene name LOC107594989,LOC107681225
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9215498 ~ 9220528 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU51091
GAGTGGAAGACTGAAGATTTGGAAGAGTTGTGTAAAGACCGTGAAGTTTAAAGCTATCGAGCTTGTGTTATCTTCTTCTACCTAGCTGGTGTCTCTTTCAGATGCAGTATCTTCGACGACAGTTTATGGTTTCTTAACAACAACAGACTGAACAATgGAGAATGGGCAAAACCGCCTCCGTCAGGCCCAGGAGGGTGTGGAGGAAATCAAAGTTATCATGCTGGATAACATTGACAAGGCTGATGAGCGTGCGGGAAAACTCGTGGAGCTTGAGGACAGAGCTGATAAACTACTTGAACATAGCGAAAAATTCTCAAAGACCTCGACTAAGGTGAAACAGAAGAAGCAGCGGGAGAATATTAAGTACAAAGTGATAATAGCAGCAGGTGTAGCTGCAGTGGTGCTTGTCATTATTGTGATTGTGGCTTTGAGCTTTAGCGAAAAGAACAGCGAAAGCACATACAAAAACTCATTAGCTACAGAAGCCCCGTGAGGTGGCTAGAAGATAAGCTGGCAGATAATATGAGTTGTGTTCGAAATTCCTCATAATGCCACCTTCAAATTCCTGCTTCGGATCAGTGAATGTACAAGCTAAGTCTGTGATGCTAATTTCTATCAAGATGATGCTAAAAAATGTTGTGGGGGGATAAAAATGGTACCATGGTGTCACTATAatttctgctttcatttttcAGTGGTAACACACACATGGCATTAATGGTAACAGTTTACATGCATCATTGTTGGACTTAAGATATTTTAGCCATAAATTAGATAAATCGGTGCCAAATGCAGGTTAAAGTGTAGCAGGGAAAAACTGTTGGACTGTAGATTTGTCAGGGAAAGAGCATTGTTTATCAGTCTTGTTTTCTAAAGAAAGAATACTTTCTTgattccgtttttttttttttatcagtgaagggtgtgtgtttatagatctcaacatttttctgtgtttggCTTTTCACATATTTGTTactatataatgtaatataattattacagCCTTGGTACCCACAGCAGTACACATTTTGGACGTATCCCTTGTATGACAGACCCATTTCCGGTTAATGAGCTGATGAGTTTGAAcagatgtgttttattgtggaaacaaacaaaacgtgCATTATTTGGAGTAATCCAGGACCTGTTTGGGGCACGCATTCTGTGACTATGGGACATTTTTGTATCTAAAGGTTTTGAAATTTATTAGTATTACTGTAACAACCATAGGAATTAAGGAGGGGCATATTCCCTCAGAATTCTTATTTGTCAGTATATtatttcttccatttttttttcaatatccACATGTTAAAATGGTAGATTTTGGTCCCTCCCGGGCTTCCATCCTTAGCCCTGTCAATGTAAAAGCAGattaattctgtaaaaaaatagtcATACCTTGAGATAGTTAAATTTGCTGCTAAAACAGCtctctatgtatgtgtgtacatatataaatgtataaataaacgtTACTTG
>XM_043240615.1
GCGCTTCCTCAACAGCAGTAGGAGTGGAAGACTGAAGATTTGGAAGAGTTGTGTAAAGACCGTGAAGTTTAAAGCTATCGAGCTTGTGTTATCTTCTTCTACCTAGCTGGTGTCTCTTTCAGATGCAGTATCTTCGACGACAGTTTATGGTTTCTTAACAACAACAGACTGAACAATgGAGAATGGGCAAAACCGCCTCCGTCAGGCCCAGGAGGGTGTGGAGGAAATCAAAGTTATCATGCTGGATAACATTGACAAGGCTGATGAGCGTGCGGGAAAACTCGTGGAGCTTGAGGACAGAGCTGATAAACTACTTGAACATAGCGAAAAATTCTCAAAGACCTCGACTAAGGTGAAACAGAAGAAGCAGCGGGAGAATATTAAGTACAAAGTGATAATAGCAGCAGGTGTAGCTGCAGTGGTGCTTGTCATTATTGTGATTGTGGCTTTGAGCTTTAGCGAAAAGAACAGCGAAAGCACATACAAAAACTCATTAGCTACAGAAGCCCCGTGAGGTGGCTAGAAGATAAGCTGGCAGATAATATGAGTTGTGTTCGAAATTCCTCATAATGCCACCTTCAAATTCCTGCTTCGGATCAGTGAATGTACAAGCTAAGTCTGTGATGCTAATTTCTATCAAGATGATGCTAAAAAATGTTGTGGGGGGATAAAAATGGTACCATGGTGTCACTATAatttctgctttcatttttcAGTGGTAACACACACATGGCATTAATGGTAACAGTTTACATGCATCATTGTTGGACTTAAGATATTTTAGCCATAAATTAGATAAATCGGTGCCAAATGCAGGTTAAAGTGTAGCAGGGAAAAACTGTTGGACTGTAGATTTGTCAGGGAAAGAGCATTGTTTATCAGTCTTGTTTTCTAAAGAAAGAATACTTTCTTgattccgtttttttttttttatcagtgaagggtgtgtgtttatagatctcaacatttttctgtgtttggCTTTTCACATATTTGTTactatataatgtaatataattattacagCCTTGGTACCCACAGCAGTACACATTTTGGACGTATCCCTTGTATGACAGACCCATTTCCGGTTAATGAGCTGATGAGTTTGAAcagatgtgttttattgtggaaacaaacaaaacgtgCATTATTTGGAGTAATCCAGGACCTGTTTGGGGCACGCATTCTGTGACTATGGGACATTTTTGTATCTAAAGGTTTTGAAATTTATTAGTATTACTGTAACAACCATAGGAATTAAGGAGGGGCATATTCCCTCAGAATTCTTATTTGTCAGTATATtatttcttccatttttttttcaatatccACATGTTAAAATGGTAGATTTTGGTCCCTCCCGGGCTTCCATCCTTAGCCCTGTCAATGTAAAAGCAGattaattctgtaaaaaaatagtcATACCTTGAGATAGTTAAATTTGCTGCTAAAACAGCtctctatgtatgtgtgtacatatataaatgtataaataaacgtTACTTGTGTAAATATA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51091 False 1485 TUCP 0.38 3 9215508 9220507
XM_043240615.1 True 1516 mRNA 0.38 3 9215498 9220528

Neighbor

gene id symbol gene type direction distance location
dnah10 dnah10,si:dkeyp-86b9.1 coding downstream 492 9185548 ~ 9215006 (-)
LOC122345763 LOC107560213,LOC107560217,LOC107709824,LOC107709823,LOC107560218,LOC107681212,LOC107715747,LOC107715746 coding downstream 47439 9165895 ~ 9168059 (-)
nsmfb LOC107709845,LOC107560226,LOC107587468,LOC107715753,LOC107681255 coding downstream 49780 9137421 ~ 9165718 (-)
LOC122345922 LOC107560213,LOC107709824,LOC107560217,LOC107709823,LOC107560218,LOC107681212,LOC107715747,LOC107715746 coding downstream 191812 9022552 ~ 9023686 (-)
trafd1 trafd1,LOC107709840,LOC107681252,LOC107560230,LOC107587319,LOC107715758 coding downstream 207466 9001907 ~ 9008032 (-)
vamp8 vamp8,LOC107594988,LOC107656490,LOC107587315,LOC107728749,LOC107709825 coding upstream 2026 9222554 ~ 9226598 (-)
ncaph ncaph,LOC107709847,LOC107673441,LOC107594987 coding upstream 6516 9227044 ~ 9232829 (-)
tacr1a tacr1a,tacr1,LOC107673353,LOC107594990,LOC107709848,LOC107656492,LOC107721554,LOC107587419 coding upstream 27793 9248321 ~ 9275552 (-)
ogfod2 ogfod2,LOC107673403 coding upstream 96126 9316654 ~ 9319605 (-)
adam28 LOC107673423,LOC107709852,LOC107594994,LOC107656497,LOC107721555 coding upstream 151486 9372014 ~ 9381877 (-)
G34594 NA non-coding downstream 154684 9013306 ~ 9060814 (-)
G34607 NA non-coding downstream 224185 8991101 ~ 8991313 (-)
G34606 NA non-coding downstream 224475 8988611 ~ 8991023 (-)
G34583 NA non-coding downstream 281359 8933911 ~ 8934139 (-)
G34582 NA non-coding downstream 282418 8932860 ~ 8933080 (-)
G34704 NA non-coding upstream 26392 9246920 ~ 9248041 (-)
G34869 NA non-coding upstream 543545 9764073 ~ 9764532 (-)
G34871 NA non-coding upstream 545740 9766268 ~ 9766607 (-)
G34877 NA non-coding upstream 557105 9777633 ~ 9778238 (-)
G35035 NA non-coding upstream 1060881 10281409 ~ 10296141 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other downstream 285445 8929470 ~ 8930053 (-)
LOC122345093 NA other downstream 537780 8674229 ~ 8677718 (-)
timm8b timm8b,LOC107717885,LOC107598437 other downstream 783912 8429700 ~ 8431586 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other downstream 800692 8411882 ~ 8414806 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other downstream 1051472 8160877 ~ 8164026 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other upstream 117300 9337828 ~ 9402623 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other upstream 1104431 10324959 ~ 10335343 (-)
G35122 NA other upstream 1240680 10461208 ~ 10461709 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other upstream 1647836 10868364 ~ 10874064 (-)
G35384 NA other upstream 1703399 10923927 ~ 10926163 (-)

Expression


Co-expression Network