G35188 (trmt2a,LOC107687689,LOC107672731)


Basic Information

Item Value
gene id G35188
gene name trmt2a,LOC107687689,LOC107672731
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10750000 ~ 10750605 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU51822
GCCTTCaacttctctctctttccttttcaGCTGTTCTTCATAAGGCACATTCCACAACGGTGTCACAGCATTGGCAATCTGGATATCGAGAggctcttcctcatcctcctctgcCTCCTGGCTTCCGGCTGCACGTTTTGCACCAGGTTGTCCACCTTCTGCTTCCTCCTCTTGTTTCCTCTTCTTGAGGATGGGATCAGCTTTGGGCTTGGCCAGACGAACACTCAGCACTTTACTCTTCCACTGCATGCCGTGCACTGCCTTCATGGCTTTGTCCCTTTCCTCCTGATTCTTAAAAGTCACAAAAGCAAACATCTGTTTGCTAAACAGCTTGATTTTGTGAGGATTGATGCCATGCTTGTTGAGGAACTTCTTCAGGTCGTTAAAGCCAATGTACTTGGGCAAGTTCTGAATCTCAACTTTGAAGATCTCAGAGGTGAAGAGATCTCCTTTAATGTAGCGATACACACCACCTGCTGCACCCTCTCcttctgctgctgttgctgccgGATTCTCTTCGTTTTTCTCTTCTATTACATCGTCTGGTTCTTTCTCTGTGCTGGGTAATGAACCAGCTGGATCAGTCTTGTCAAGAGCAATATCTGT

Function

symbol description
trmt2a Predicted to enable RNA binding activity and RNA methyltransferase activity. Predicted to act upstream of or within RNA processing and methylation. Is expressed in several structures, including cerebellum; digestive system; midbrain; pectoral fin musculature; and retina. Orthologous to human TRMT2A (tRNA methyltransferase 2 homolog A).

NR:

description
PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51822 True 606 lncRNA 0.47 1 10750000 10750605

Neighbor

gene id symbol gene type direction distance location
atp6v0a2b atp6v0a2b,atp6v0a2,LOC107687687,LOC107726380,LOC107744440,LOC107672728 coding downstream 758 10738969 ~ 10749242 (-)
rhbdd3 rhbdd3,LOC107744491,LOC107673375,LOC107599928,LOC107592310,LOC107730717,LOC107672772 coding downstream 138458 10609022 ~ 10611542 (-)
mrpl41 LOC107744490,LOC107730714,LOC107672724,LOC107592314,LOC107673372,LOC107599924 coding downstream 216410 10531654 ~ 10533590 (-)
paxx zgc:193538,LOC107599923,LOC107673439,LOC107592313,LOC107730722,LOC107672790 coding downstream 222962 10524885 ~ 10527038 (-)
LOC122345081 fut7,LOC107744472,LOC107599961,LOC107683322 coding downstream 284612 10463352 ~ 10465388 (-)
dgcr8 dgcr8,LOC107592303,LOC107726381,LOC107672729,LOC107687688,LOC107744441 coding upstream 2796 10753401 ~ 10761225 (-)
ctsll LOC107744447,LOC107599936,LOC107726378,LOC107687684,LOC107592300,LOC107672789 coding upstream 136547 10887152 ~ 10889785 (-)
LOC122344793 NA coding upstream 140237 10890842 ~ 10893594 (-)
zdhhc23a LOC107744494,LOC107599976,LOC107687708,LOC107592365,LOC107672710 coding upstream 143547 10894152 ~ 10900274 (-)
atp6v1aa atp6v1a,atp6v1aa,LOC107672757,LOC107592296,LOC107599937,LOC107687683 coding upstream 158293 10908898 ~ 10918493 (-)
G35154 ap1b1,LOC107730709,LOC107672709,LOC107599930 non-coding downstream 77385 10666774 ~ 10672615 (-)
G35168 gas2l1,LOC107599929,LOC107744437,LOC107673400,LOC107730708,LOC107592306,LOC107672792 non-coding downstream 102857 10642436 ~ 10647143 (-)
G35152 NA non-coding downstream 130578 10614748 ~ 10619422 (-)
G35142 NA non-coding downstream 232658 10516671 ~ 10517342 (-)
G35139 abca2,LOC107672707,LOC107730718 non-coding downstream 236715 10512930 ~ 10513285 (-)
G35189 NA non-coding upstream 730 10751335 ~ 10751904 (-)
G35194 NA non-coding upstream 16256 10766861 ~ 10790372 (-)
G35201 NA non-coding upstream 82253 10832858 ~ 10833595 (-)
G35203 NA non-coding upstream 87400 10838005 ~ 10838297 (-)
LOC122346117 NA non-coding upstream 125043 10875648 ~ 10886738 (-)
G35122 NA other downstream 288291 10461208 ~ 10461709 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other downstream 414657 10324959 ~ 10335343 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other downstream 1347377 9337828 ~ 9402623 (-)
vamp5 LOC107594989,LOC107681225 other downstream 1529472 9215498 ~ 9220528 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other downstream 1819947 8929470 ~ 8930053 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other upstream 117759 10868364 ~ 10874064 (-)
G35384 NA other upstream 173322 10923927 ~ 10926163 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other upstream 209706 10960311 ~ 10969118 (-)
hmgn7 hmgn7,LOC107672554,LOC107756557,LOC107680402,LOC107565427,LOC107748629,LOC107597243,LOC108260037,LOC108442050 other upstream 669350 11419955 ~ 11467122 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other upstream 833175 11583780 ~ 11652627 (-)

Expression


Co-expression Network