hmgn7 (hmgn7,LOC107672554,LOC107756557,LOC107680402,LOC107565427,LOC107748629,LOC107597243,LOC108260037,LOC108442050)


Basic Information

Item Value
gene id hmgn7
gene name hmgn7,LOC107672554,LOC107756557,LOC107680402,LOC107565427,LOC107748629,LOC107597243,LOC108260037,LOC108442050
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11419955 ~ 11467122 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU52322
CCTCCCATTCAACCACTGGCTCTAATGTAGCCCTGTGTTTACTACAGAATTAGTGCATAGCGGACGACAGTCTCCTGAACTGTGAACTCCGAATCACAAAAGATAACCTGTTAGTTTtgcataaaagaagaaaaatatccCAAACTCAACATGCCCAAGAGAAAGGGAACTGATGGAGAAGTCAAGGAGGAGCCTCAGAGAAGGTCTGCTAGATTATCAGCGAAACCAACACCTCCAAAACCTGAACCAAAACCGAAAAAAACTCCCAAGaaagaaaaggaagTGAACGATAAAAAGGAAGACAAGAAAGCAAAGGCAAAGGCTGAGGAATCCAAGGAGGAGAACCAATCAGAAAATGGGGAGACTAAGACCAATGAgGTTGAAAAAACTCAAGATGAGGCAGCAGAGGCCGAGAAGGATGACCCGAAGACAGAGTAGCACCACGCCtgtccatccgtccgtccgtccatcctTTCCCTTTCCCccctttcctttcttttatcttcctctctctttcccagttttctctctccctctccagcTCTCTCAACAACCTCCTCTCTGCCCATCACCACCAGAGGAATATTTTTATCAGCAAATTTGTAAATACTGGTTCAGGTTTTTAGCACAAAAAACAAAGCTGACTAAACGAGTCTTGTGTTCGGCCGCGGCTGTATCAGGTGTCTACAACACGAGAGGTGTGAAAAAAGGCGGCGTCTTTCTTTCGTTTCGTtgattattctgtttttatctcttctttctttttcttttcttttttttttttttttgatttcttttgttttttaaagcggATGGTCTGTAGCTTGGTTTTGGAGTGGGAGGTGGGAGGAGGCTCTCAGTCTGTATGTCCGTTAGTGCTCGTGATGTTGCTCTGGAGTCTGTGATGTTTCTGTACggggtttgttttatttttcttttaaacgtaATTGATTGTCTTTAAGAATGAGGAATGAGTTCAACAAATgtagaagaaaagagagaaaacaactaAAGACAAACTGCTTACATTCCAGGTTCAGCATTAGATGGTGACTCCTGGCTTTTTAAGAATCATACCACCTTTGCAATTTGTTGAAACCGATAACTGGGCTTTGATAAgaggccagaaaaaaaaaaaaaaaccttctgttGTTATAGAGGACTTTTTTGAAATTACGGGATTCCAAGAAAAAGAATTTAAAGCgttttttgaaatttttttaacactgaaaattcATCTGTGAAAAAGTACTTAGTGTCCCCTATAATGCTCTCGGTCTCACTCAATAAAAATCCATCATTGGAGTTTTCCTCAAAATGTCTGCTGTGGTCTTTTACACtgattgtata
>TU52323
CCTCCCATTCAACCACTGGCTCTAATGTAGCCCTGTGTTTACTACAGAATTAGTGCATAGCGGACGACAGTCTCCTGAACTGTGAACTCCGAATCACAAAAGATAACCTGTTAGTTTtgcataaaagaagaaaaatatccCAAACTCAACATGCCCAAGAGAAAGGGAACTGATGGAGAAGTCAAGGAGGAGCCTCAGAGAAGGTCTGCTAGATTATCAGCGAAACCAACACCTCCAAAACCTGAACCAAAACCGAAAAAAACTCCCAAGaaagaaaaggaagTGAACGATAAAAAGGAAGACAAGAAAGCAAAGGCAAAGGCTGAGGAATCCAAGGAGGAGAACCAATCAGAAAATGGGGAGACTAAGACCAATGAgGTTGAAAAAACTCAAGATGAGGCAGCAGAGGCCGAGAAGGATGACCCGAAGACAGAGTAGCACCACGCCtgtccatccgtccgtccgtccatcctTTCCCTTTCCCccctttcctttcttttatcttcctctctctttcccagttttctctctccctctccagcTCTCTCAACAACCTCCTCTCTGCCCATCACCACCAGAGGAATATTTTTATCAGCAAATTTGTAAATACTGGTTCAGGTTTTTAGCACAAAAAACAAAGCTGACTAAACGAGTCTTGTGTTCGGCCGCGGCTGTATCAGGTGTCTACAACACGAGAGGTGTGAAAAAAGGCGGCGTCTTTCTTTCGTTTCGTtgattattctgtttttatctcttctttctttttcttttcttttttttttttttttgatttcttttgttttttaaagcggATGGTCTGTAGCTTGGTTTTGGAGTGGGAGGTGGGAGGAGGCTCTCAGTCTGTATGTCCGTTAGTGCTCGTGATGTTGCTCTGGAGTCTGTGATGTTTCTGTACggggtttgttttatttttcttttaaacgtaATTGATTGTCTTTAAGAATGAGGAATGAGTTCAACAAATgtagaagaaaagagagaaaacaactaAAGACAAACTGCTTACATTCCAGGTTCAGCATTAGATGGTGACTCCTGGCTTTTTAAGAATCATACCACCTTTGCAATTTGTTGAAACCGATAACTGGGCTTTGATAAgaggccagaaaaaaaaaaaaaaaccttctgttGTTATAGAGGACTTTTTTGAAATTACGGGATTCCAAGAAAAAGAATTTAAAGCgttttttgaaatttttttaacactgaaaattcATCTGTGAAAAAGTACTTAGTGTCCCCTATAATGCTCTCGGTCTCACTCAATAAAAATCCATCATTGGAGTTTTCCTCAAAATaaaaaaaaaaaaaaaaaaaaaaa
>XM_043240838.1
CCTCCCATTCAACCACTGGCTCTAATGTAGCCCTGTGTTTACTACAGAATTAGTGCATAGCGGACGACAGTCTCCTGAACTGTGAACTCCGAATCACAAAAGATAACCTGTTAGTTTtgcataaaagaagaaaaatatccCAAACTCAACATGCCCAAGAGAAAGGGAACTGATGGAGAAGTCAAGGAGGAGCCTCAGAGAAGGTCTGCTAGATTATCAGCGAAACCAACACCTCCAAAACCTGAACCAAAACCGAAAAAAACTCCCAAGaaagaaaaggaagTGAACGATAAAAAGGAAGACAAGAAAGCAAAGGCAAAGGCTGAGGAATCCAAGGAGGAGAACCAATCAGAAAATGGGGAGACTAAGACCAATGAgGTTGAAAAAACTCAAGATGAGGCAGCAGAGGCCGAGAAGGATGACCCGAAGACAGAGTAGCACCACGCCtgtccatccgtccgtccgtccatcctTTCCCTTTCCCccctttcctttcttttatcttcctctctctttcccagttttctctctccctctccagcTCTCTCAACAACCTCCTCTCTGCCCATCACCACCAGAGGAATATTTTTATCAGCAAATTTGTAAATACTGGTTCAGGTTTTTAGCACAAAAAACAAAGCTGACTAAACGAGTCTTGTGTTCGGCCGCGGCTGTATCAGGTGTCTACAACACGAGAGGTGTGAAAAAAGGCGGCGTCTTTCTTTCGTTTCGTtgattattctgtttttatctcttctttctttttcttttcttttttttttttttttgatttcttttgttttttaaagcggATGGTCTGTAGCTTGGTTTTGGAGTGGGAGGTGGGAGGAGGCTCTCAGTCTGTATGTCCGTTAGTGCTCGTGATGTTGCTCTGGAGTCTGTGATGTTTCTGTACggggtttgttttatttttcttttaaacgtaATTGATTGTCTTTAAGAATGAGGAATGAGTTCAACAAATgtagaagaaaagagagaaaacaactaAAGACAAACTGCTTACATTCCAGGTTCAGCATTAGATGGTGACTCCTGGCTTTTTAAGAATCATACCACCTTTGCAATTTGTTGAAACCGATAACTGGGCTTTGATAAgaggccagaaaaaaaaaaaaaaaccttctgttGTTATAGAGGACTTTTTTGAAATTACGGGATTCCAAGAAAAAGAATTTAAAGCgttttttgaaatttttttaacactgaaaattcATCTGTGAAAAAGTACTTAGTGTCCCCTATAATGCTCTCGGTCTCACTCAATAAAAATCCATCATTGGAGTTTTCCTCAAAA

Function

symbol description
hmgn7 Predicted to enable chromatin binding activity. Predicted to be involved in chromatin organization. Predicted to be located in chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: non-histone chromosomal protein HMG-14A-like

GO:

id name namespace
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0031492 nucleosomal DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52322 True 1350 TUCP 0.40 6 11463831 11467122
TU52323 False 1342 TUCP 0.40 7 11419955 11467122
XM_043240838.1 False 1318 mRNA 0.40 6 11463863 11467122

Neighbor

gene id symbol gene type direction distance location
zdhhc15a zdhhc15a,LOC107733221,LOC107672497,LOC107597239 coding downstream 7608 11403003 ~ 11412347 (-)
nexmifa si:dkey-114c15.7,LOC107597238,LOC107672487,LOC107733230,LOC107592265,LOC107748635 coding downstream 20348 11389320 ~ 11399607 (-)
prps1a prps1a,LOC107733231,LOC107672505,LOC103031347,LOC108443767,LOC105023901 coding downstream 31060 11382680 ~ 11388895 (-)
tbx5b tbx5b,LOC107733219,LOC107592384,LOC107672879,LOC107748638,LOC107680353,LOC107597309 coding downstream 38172 11373802 ~ 11381783 (-)
cfap73 LOC107680393,LOC107732615,LOC107592352,LOC107592387,LOC107578638 coding downstream 51341 11365078 ~ 11368614 (-)
radx LOC107672617,LOC107756553,LOC107680386,LOC107597314,LOC107680354 coding upstream 52453 11519575 ~ 11526037 (-)
npas2 npas2,LOC107672582,LOC107597247,LOC107741183,LOC107565421,LOC107680380 coding upstream 59940 11527062 ~ 11573963 (-)
vma21 vma21,LOC107741184,LOC107565438,LOC107680358,LOC107756551,LOC107672888,LOC107597345 coding upstream 113712 11580834 ~ 11582813 (-)
mtnr1c mtnr1c,LOC107756550,LOC107741285,LOC107672899,LOC107680355,LOC108442058 coding upstream 116833 11583955 ~ 11599842 (-)
tnfsf10l4 LOC107741286,LOC107680360,LOC107565437 coding upstream 151988 11619110 ~ 11621440 (-)
G35434 NA non-coding downstream 89589 11304281 ~ 11330366 (-)
G35522 NA non-coding downstream 107125 11311549 ~ 11312830 (-)
G35450 NA non-coding downstream 169949 11249199 ~ 11250006 (-)
G35499 NA non-coding downstream 199064 11219968 ~ 11220891 (-)
G35501 fam76b,LOC107680374,LOC107592275,LOC107687655,LOC107597227 non-coding downstream 206218 11212039 ~ 11213737 (-)
G35592 LOC107741189,LOC107680392,LOC107565414,LOC107733362,LOC107597318 non-coding upstream 203835 11670957 ~ 11674817 (-)
G35594 NA non-coding upstream 225428 11692550 ~ 11694947 (-)
G35597 NA non-coding upstream 229069 11696191 ~ 11697674 (-)
G35599 NA non-coding upstream 230826 11697948 ~ 11699666 (-)
G35601 NA non-coding upstream 234111 11701233 ~ 11703708 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other downstream 450837 10960311 ~ 10969118 (-)
G35384 NA other downstream 493792 10923927 ~ 10926163 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other downstream 545891 10868364 ~ 10874064 (-)
G35122 NA other downstream 958246 10461208 ~ 10461709 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other downstream 1084612 10324959 ~ 10335343 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other upstream 116658 11583780 ~ 11652627 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other upstream 328534 11795656 ~ 11815944 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other upstream 698281 12165403 ~ 12169410 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other upstream 850681 12317803 ~ 12319685 (-)
G35936 NA other upstream 1034792 12501914 ~ 12505958 (-)

Expression


Co-expression Network