CI01000004_14557340_14560918 (TRAC)


Basic Information

Item Value
gene id CI01000004_14557340_14560918
gene name TRAC
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14557281 ~ 14561042 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_14557340_14560918.mRNA
AGAAGGCGGAGCTTAATATCAAGATGTAGAAGCATTTCAATCTGAAGGAGGTTGTCAGAATTCAAAGGCATCCAGTCTGAATGATACTCAAGTCTTTCAGATTCTTCTTCAGATATCTGCTATCATGATTATTTTCACTCTCCTCAGTTTTTTGTGGATGTTTATTGGTCACACAGAGGCAGATGTAATAAATCCCTTGTCAGAGGATGAAAATAGACTTGTTGGTGAGACTGTTACTCTGTCCTGCAATTACAAAGACTATACGGGTACTGTACAGAATTTACAATGGTACAGACAATATCCCAGATCCAAACCAGAGTTCCTCCTTTACATTTTCGAAAGTGGAGCTATGAGTGAAAATAGACCAGACAGATTTTCAGCTGAAGTTCATAAAGATATTAAACAAGTGGATCTGAAGATCTCCTCTGCTGTTCAGGCAGATTCTGCCATGTACTATTGTGCCCTGGTGCCCACAGTGACAGGAAATATATCTGCATCATACAAAAACCTCCCATCAGAGGGCGTTCTTCTCATTTCTGTGGTCCTCATGTACACAGTGAGCTCAAGACTCATCATGGAAGGTCAAATCTTGCCACAGGGTGGAGCTCCAGACTTAAATCACAGTGTTTTAGTGAGAAAAGACACATCCGAGTTTGTCATTTCACTCCATCATGCTGCTCTGTGCACTTGGAATATTTGCAGTACTTGCAGCGGTGTTGTTTACAATCTACTGTGGTATCGTCAGTATCAGAGATCCAAACCAGAACTCCTTCTCTCCATCAGTGAATCTGGAGATGCAGTTAAAGCAGATCCATCAGCCCACTGGTTTTCTCCTAAAGTTGACAAACTCAGAAAGCTCATGGAACTGGAAATCAGTCCTGCTAAAGTATCAGACTCTGCTCTGTATTACTGTGCTCTGAAAACTTTGAACTGTTTTGCCAGGTGCTGTATGACTTCAACAGAGGGCGTTCTTCTCATTTCTGTGGTCCTCATGTACACAGTGAGCTCAAGACTCATCATGGAAGGAGACTCTCTTGGTGATGTAATAACATCTCATGGTTCTGAAAAAGAAGCTCAAGATGGTAACAGTGTTACTCTCTCCTGCAACTACAGCGGTGTTGTTCTCAATCTACTGTGGTATCGTCAGTATCAGAGATCCAAACCAGAACTCCTTCTCTCCATCAGTGAGTCTGGAGATGCAGTTAAAGCAGATCCATCAGCCCAATGGTTTTCTCCTAAAGTTGACAAACTCAGAAAGCTCATGGAACTGGAAATCAGCCCTGCTAAAGTATCAGACTCTGCTGTGTATTATTGTTTCCTCAACACAAAATCTCCCTGAGGAAAAAAAAAAAAAAAAAAAACCTTGCTTCCATCACAATCCCAGATGAAACTAATAAA
>TU38240
TGAGCTCAAGACTCATCATGGAAGGTCAAATCTTGCCACAGGGTGGAGCTCCAGACTTAAATCACAGTGTTTCAGAGACTCTCTTGGTGATGTAATAACATCTCATGGTTCTGAAAAAGAAGCTCAAGATGGTAACAGTGTTACTCTCTCCTGCAACTACAGCGGTGTTGTTCTCAATCTACTGTGGTATCGTCAGTATCAGAGATCCAAACCAGAACTCCTTCTCTCCATCA

Function

symbol description
trac Is expressed in digestive system and immune system.

NR:

description
T-cell receptor V-alpha6 chain precursor, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_14557340_14560918.mRNA False 1398 mRNA 0.41 7 14557281 14561042
TU38240 True 233 lncRNA 0.44 2 14557495 14557906

Neighbor

gene id symbol gene type direction distance location
CI01000004_14543631_14551256 NA coding downstream 5929 14541515 ~ 14551352 (-)
CI01000004_14425486_14425711 NA coding downstream 131570 14424179 ~ 14426902 (-)
CI01000004_14389315_14396492 NMNAT2 coding downstream 160789 14389035 ~ 14396492 (-)
CI01000004_14115087_14115790 TCTEX1D4 coding downstream 441491 14115005 ~ 14115790 (-)
CI01000004_14041671_14073418 TNW, TNN coding downstream 483511 14041076 ~ 14073770 (-)
CI01000004_14563131_14563558 NA coding upstream 1027 14562069 ~ 14563801 (-)
CI01000004_14569847_14571236 NA coding upstream 8764 14569806 ~ 14571496 (-)
CI01000004_14571792_14572305 NA coding upstream 10699 14571741 ~ 14572426 (-)
CI01000004_14574723_14575066 NA coding upstream 12239 14573281 ~ 14575066 (-)
CI01000004_14591958_14594875 NA coding upstream 30234 14591276 ~ 14594875 (-)
G33650 NA non-coding downstream 29654 14527408 ~ 14527627 (-)
G33648 NA non-coding downstream 31142 14525935 ~ 14526139 (-)
G33638 NA non-coding downstream 35703 14521367 ~ 14521578 (-)
G33633 NA non-coding downstream 57823 14497445 ~ 14499458 (-)
G33627 NA non-coding downstream 64495 14488845 ~ 14492786 (-)
G33758 NA non-coding upstream 27556 14588598 ~ 14589028 (-)
CI01000004_14612987_14614652 NA non-coding upstream 52074 14612987 ~ 14614652 (-)
CI01000004_14618502_14618962 NA non-coding upstream 57611 14618156 ~ 14619037 (-)
G34461 NA non-coding upstream 126395 14687437 ~ 14693318 (-)
G34479 NA non-coding upstream 145681 14706723 ~ 14707120 (-)
G32207 NA other downstream 2172501 12376168 ~ 12384780 (-)
G32150 NA other downstream 2776330 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 3144374 11406957 ~ 11412907 (-)
G31203 NA other downstream 3806640 10746437 ~ 10750641 (-)
G33746 NA other upstream 7751 14568793 ~ 14569264 (-)
G33750 NA other upstream 17416 14578458 ~ 14579001 (-)
G33755 NA other upstream 20364 14581406 ~ 14581873 (-)
G33756 NA other upstream 24129 14585171 ~ 14585745 (-)

Expression


Co-expression Network