sh2d1aa (sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102)


Basic Information

Item Value
gene id sh2d1aa
gene name sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12165403 ~ 12169410 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU52701
GAGACAGAATGGAGGATCTGGCAGAGTATCACGGGAGCATTAGTAAGAGGCGAGCGGAAAAGATCCTGAGTGAAGCAGGCAGAGACGGCAGCTATCTGATCAGAGACAGCGCGAGCGCCGCGGGGTCTTactgcgtgtgtgtgctGTGTGATGGATGGGTTTACACCTACCGAGTTTTCAAACAGAAGGATGGCCTCTGGACAATAGAGgtgGCTCCTGGGATGAAGGAAAGACTCTTTAGGAAAGTTGCCAACCTTATTGCTGCCTTTAAGATCCCAGACCAAGGCATCTCTGTTCCTCTTTTGTATCCTGTAAACAGAgctaaataataacatacaaGCCACAACATACCTCAGAACAGTTTCTACATGCACGAGAGTGACTTCTCTGGGGTCTCTTAAACCTGTGGTGACTGTtgtaaatgctgtaaataatctgtgagatataaaaactataaatgctCTGCTAAAGCATGCTAAATAATTGGCAAGCCCTGTTACATAATACATTGTATACTTTAATTTTGATGTTAGTTTTtctctgccatttttttttttgttcaagaaTAATTATCTCATGTTAGCATCAGCAACAAGATACACCCATGAGAGAAGAAGGCCTTGAACAAAATGTCAGACCTGAGTTCTGAGTTAGATTGCTATCTTGTTTTCCGTCTAGTAATGAGAGTTTGCTTAGcaagtgtttctgtgttttagaaAATTCTATTTCTGTACACTAAACAGGAAATAACAGTTTTCTCATTAAACTTCACTGAGCTACGAACTTCCTGCAATAATACCATCACAATAATGTTATAAACAAATTGGTCTTCCGTGTAAGGAAATTCAGAGCCTTTTGAAGTTACCAAATAAAACCcaac
>XM_043238684.1
ATCAGATTCACTCAGAGTTTCCATTGACTTCCTCTACGGCTATTGTGGTGTCCGTGTACGCGCGTGTAATTGTCACAGCCAGTGAGACAGAATGGAGGATCTGGCAGAGTATCACGGGAGCATTAGTAAGAGGCGAGCGGAAAAGATCCTGAGTGAAGCAGGCAGAGACGGCAGCTATCTGATCAGAGACAGCGCGAGCGCCGCGGGGTCTTactgcgtgtgtgtgctGTGTGATGGATGGGTTTACACCTACCGAGTTTTCAAACAGAAGGATGGCCTCTGGACAATAGAGgtgGCTCCTGGGATGAAGGAAAGACTCTTTAGGAAAGTTGCCAACCTTATTGCTGCCTTTAAGATCCCAGACCAAGGCATCTCTGTTCCTCTTTTGTATCCTGTAAACAGAgctaaataataacatacaaGCCACAACATACCTCAGAACAGTTTCTACATGCACGAGAGTGACTTCTCTGGGGTCTCTTAAACCTGTGGTGACTGTtgtaaatgctgtaaataatctgtgagatataaaaactataaatgctCTGCTAAAGCATGCTAAATAATTGGCAAGCCCTGTTACATAATACATTGTATACTTTAATTTTGATGTTAGTTTTtctctgccatttttttttttgttcaagaaTAATTATCTCATGTTAGCATCAGCAACAAGATACACCCATGAGAGAAGAAGGCCTTGAACAAAATGTCAGACCTGAGTTCTGAGTTAGATTGCTATCTTGTTTTCCGTCTAGTAATGAGAGTTTGCTTAGcaagtgtttctgtgttttagaaAATTCTATTTCTGTACACTAAACAGGAAATAACAGTTTTCTCATTAAACTTCACTGAGCTACGAACTTCCTGCAATAATACCATCACAATAATGTTATAAACAAATTGGTCTTCCGTGTAAGGAAATTCAGAGCCTTTTGAAGTTACCAAATAAAACCcaaccaaaaat

Function

symbol description
sh2d1aa Human ortholog(s) of this gene implicated in X-linked lymphoproliferative syndrome 1. Orthologous to human SH2D1A (SH2 domain containing 1A).

NR:

description
PREDICTED: SH2 domain-containing protein 1A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52701 False 880 TUCP 0.40 3 12165410 12169327
XM_043238684.1 True 970 mRNA 0.41 3 12165403 12169410

Neighbor

gene id symbol gene type direction distance location
gab3 LOC107746243,LOC107597263,LOC107672781,LOC107663235,LOC107741201 coding downstream 242394 11902322 ~ 11923009 (-)
shisa2a shisa2,LOC107746248,LOC107672960,LOC107597350,LOC107741289,LOC107557100 coding downstream 316448 11847127 ~ 11848955 (-)
zc3h12b LOC107741193,LOC107746237,LOC107672716,LOC107597257,LOC107663225 coding downstream 325361 11825267 ~ 11840042 (-)
fdx1b LOC107672951,LOC107746235,LOC107597349,LOC107741288,LOC107663211 coding downstream 379260 11777612 ~ 11786143 (-)
arhgap20b LOC107672940,LOC107597255,LOC107663218,LOC107746244,LOC107573640 coding downstream 397389 11731519 ~ 11768014 (-)
LOC122345274 NA coding upstream 184 12169594 ~ 12173002 (-)
LOC122344646 NA coding upstream 3627 12173037 ~ 12177215 (-)
LOC122345275 LOC107597264,LOC107672815,LOC107742671 coding upstream 21292 12190702 ~ 12196377 (-)
LOC122344659 NA coding upstream 102807 12272217 ~ 12273638 (-)
LOC122345273 NA coding upstream 187426 12356836 ~ 12363715 (-)
G35690 LOC107597260,LOC107746241,LOC107672756,LOC107741198,LOC107663227,LOC107557115 non-coding downstream 294350 11866762 ~ 11871053 (-)
G35660 NA non-coding downstream 389290 11775805 ~ 11776113 (-)
LOC122344709 NA non-coding downstream 390791 11769860 ~ 11774612 (-)
G35601 NA non-coding downstream 461695 11701233 ~ 11703708 (-)
G35599 NA non-coding downstream 465737 11697948 ~ 11699666 (-)
LOC122345280 NA non-coding upstream 9641 12179051 ~ 12179750 (-)
G35797 NA non-coding upstream 12077 12181487 ~ 12182979 (-)
G35805 NA non-coding upstream 57508 12226918 ~ 12248708 (-)
G35804 NA non-coding upstream 59172 12228582 ~ 12247509 (-)
G35812 arhgap25,LOC107597266,LOC107743332,LOC107654642 non-coding upstream 86070 12255480 ~ 12256812 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 349459 11795656 ~ 11815944 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other downstream 512776 11583780 ~ 11652627 (-)
hmgn7 hmgn7,LOC107672554,LOC107756557,LOC107680402,LOC107565427,LOC107748629,LOC107597243,LOC108260037,LOC108442050 other downstream 698281 11419955 ~ 11467122 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other downstream 1196285 10960311 ~ 10969118 (-)
G35384 NA other downstream 1239240 10923927 ~ 10926163 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other upstream 148393 12317803 ~ 12319685 (-)
G35936 NA other upstream 332504 12501914 ~ 12505958 (-)
G36047 NA other upstream 884434 13053844 ~ 13054857 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other upstream 1409651 13579061 ~ 13582290 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 1484884 13654294 ~ 13699226 (-)

Expression


Co-expression Network