G35797


Basic Information

Item Value
gene id G35797
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12181487 ~ 12182979 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU52704
AAGAATGTCATTTTggataatgcatttttttacttctgaggcttttgttcattgtttatttatctgttaATTATAGAATTACCACTACAGGAAATGTCATCAAATCcaaactataaagataacaagCTACCTGGGGATAACAGCCTTGAAAGGAAACCCAAAATTTCGTATGATAGGAAACCAAACAAAAGCCAGCAAGGGAAGGAAGACCTGAGACACAAGAACTTTCAGCTTGTTGTTCCCAGTACATCAGAAGAACCAGAGGTTTCTTTGGGGTCTGATTTGATCGTTTCTTGTTTCCTGTCTCCTGAGATCAGTGCGCTTGACCTTTGAGATAAGCTGGTCTACCGATAcagcctgtgtttgtgtgtataaggACAAGCAGGTGATAGAAGGGGTTTTGTTCAAGGACAGAGCGAGTCTGTTCACTCACAAGCTTAGGGAAGGAAATGTGTCCTTACGACTGAAAAACTTCAGGCCATCAGATATAGGAAATTACCATTGTCAGGTCAGCGGCAAAGACCGAAGAGAGAGGATAACAGTAAGAGGTGAGTGGTCATCGACATGAGCTCAGAACTCATTAATAATGTCAGACTGAATGTGAACTGAAACAGAATGTTAGGGGTATGTTAGGTCCGTATATCAGTGTGCGATCAGTAAACATGTCTTATCCAATCTATCCTTATCCAGTCTGTTTCCCTTAGACATTCAACATTCAagttttaatactttataaaaaatgaattgttc

Function

GO:

id name namespace
GO:0044459 obsolete plasma membrane part cellular_component
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52704 True 750 lncRNA 0.39 5 12181487 12182979

Neighbor

gene id symbol gene type direction distance location
LOC122344646 NA coding downstream 4272 12173037 ~ 12177215 (-)
LOC122345274 NA coding downstream 8485 12169594 ~ 12173002 (-)
gab3 LOC107746243,LOC107597263,LOC107672781,LOC107663235,LOC107741201 coding downstream 258478 11902322 ~ 11923009 (-)
shisa2a shisa2,LOC107746248,LOC107672960,LOC107597350,LOC107741289,LOC107557100 coding downstream 332532 11847127 ~ 11848955 (-)
zc3h12b LOC107741193,LOC107746237,LOC107672716,LOC107597257,LOC107663225 coding downstream 341445 11825267 ~ 11840042 (-)
LOC122345275 LOC107597264,LOC107672815,LOC107742671 coding upstream 7723 12190702 ~ 12196377 (-)
LOC122344659 NA coding upstream 89238 12272217 ~ 12273638 (-)
LOC122345273 NA coding upstream 173857 12356836 ~ 12363715 (-)
arhgap25 LOC107741203,LOC107557123,LOC107663229,LOC107654642,LOC107743332,LOC107597266 coding upstream 198385 12381364 ~ 12394042 (-)
cds2 cds2,LOC107597267,LOC107654641,LOC107741205,LOC107663217 coding upstream 213303 12396282 ~ 12409668 (-)
LOC122345280 NA non-coding downstream 1737 12179051 ~ 12179750 (-)
G35690 LOC107597260,LOC107746241,LOC107672756,LOC107741198,LOC107663227,LOC107557115 non-coding downstream 310434 11866762 ~ 11871053 (-)
G35660 NA non-coding downstream 405374 11775805 ~ 11776113 (-)
LOC122344709 NA non-coding downstream 406875 11769860 ~ 11774612 (-)
G35601 NA non-coding downstream 477779 11701233 ~ 11703708 (-)
G35805 NA non-coding upstream 43939 12226918 ~ 12248708 (-)
G35804 NA non-coding upstream 45603 12228582 ~ 12247509 (-)
G35812 arhgap25,LOC107597266,LOC107743332,LOC107654642 non-coding upstream 72501 12255480 ~ 12256812 (-)
G35922 LOC107696053,LOC107654639,LOC107743336,LOC107595973 non-coding upstream 260808 12443787 ~ 12445220 (-)
G35923 NA non-coding upstream 265235 12448214 ~ 12450765 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other downstream 12077 12165403 ~ 12169410 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 365543 11795656 ~ 11815944 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other downstream 528860 11583780 ~ 11652627 (-)
hmgn7 hmgn7,LOC107672554,LOC107756557,LOC107680402,LOC107565427,LOC107748629,LOC107597243,LOC108260037,LOC108442050 other downstream 714365 11419955 ~ 11467122 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other downstream 1212369 10960311 ~ 10969118 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other upstream 134824 12317803 ~ 12319685 (-)
G35936 NA other upstream 318935 12501914 ~ 12505958 (-)
G36047 NA other upstream 870865 13053844 ~ 13054857 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other upstream 1396082 13579061 ~ 13582290 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 1471315 13654294 ~ 13699226 (-)

Expression


Co-expression Network