LOC122345423


Basic Information

Item Value
gene id LOC122345423
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13299755 ~ 13312652 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU53187
CAGAATTATACATCTGAAACCAGCGAAGTACTGGACAGATGTCACCGATTGAGCCGGCCCCCCTCCCACTGCCCCGCCTCTTCCCCTCCCTATCAAAGGCCTGGGAGTGCCGGAGCACACATCAATCATTCTGAGTGACAGGTCAAACACACAGTGTCACGCCTCAGCGCTCACCaaggacagagagagggagggaaggagggaggaggaggatgtGGAAAGGT
>TU53198
CCGAAACCATTTgtacaaaaaatagaaaaaagtaataatgcatttgaatgtAATGAATGTAGCTACATGCTAACACGAACATGTAAACATTGTCAACAGTTTGACAAGAGGTTGGTTTTTACTGCTTACTAAAACGATGTACTTTCCTTTATCATTCTTAGTGAAGAATGTACCCTTAGTGTAAAGTGGAATAGTGTGAATTGGCATTCAACCTCTGACTGGCTCCTCTACActggtgtgtttgtgagagagaaagagagagtgaagtGAATGGAGTTAGTAAGCTTAATGATGTTGCAGTGCTAAGCTGTTTCTCTCATTACTC
>XR_006251001.1
cgcttttacatttttctcagtCCAAATTATAGCTGTGAACCATGCAGATAGGAACAGAATTATACATCTGAAACCAGCGAAGTACTGGACAGATGTCACCGATTGAGCCGGCCCCCCTCCCACTGCCCCGCCTCTTCCCCTCCCTATCAAAGGCCTGGGAGTGCCGGAGCACACATCAATCATTCTGAGTGACAGGTCAAACACACAGTGTCACGCCTCAGCGCTCACCaaggacagagagagggagggaaggagggaggaggaggatgtGGAAAGGTGGATCACTGAAATAGGAGGAGGACACCGGAGAAAAGGGAGTGAGAGGGTATGATATGGACCCACTCGTGACCTGTGGTATCTCACTCGACCTCACAGTGACAACTACAGTTGAATTAATCACCGGCCGTCTCTCGTTCTGTCTCTGTCTGGACAGATGTATTACCGATGTGGACTGTAACTCATAGTAAAGGCTTTGTTTTTGGCCTATTGAGAAGCTTTAGTTAGTAGGTTTTAGTTACTCACAGGGCTAAGATGTGGATATGGTAAATCAGACTCTCACTGATGAGCAATTTGCATGCTATTCTATATGGCAGACAAGATTAGGATTAGAACATCCTAGACTATATAATTTTAGGATTAATATTACCCGAAACCATTTgtacaaaaaatagaaaaaagtaataatgcatttgaatgtAATGAATGTAGCTACATGCTAACACGAACATGTAAACATTGTCAACAGTTTGACAAGAGGTTGGTTTTTACTGCTTACTAAAACGATGTACTTTCCTTTATCATTCTTAGTGAAGAATGTACCCTTAGTGTAAAGTGGAATAGTGTGAATTGGCATTCAACCTCTGACTGGCTCCTCTACActggtgtgtttgtgagagagaaagagagagtgaagtGAATGGAGTTAGTAAGCTTAATGATGTTGCAGTGCTAAGCTGTTTCTCTCATTACTCTGACTGACATTTGAATGCTAATCCTGAATTAGCTGGTAAACTATCTAAGTGTTTGAGTGATGACTTCATCAAACTTCACTCCATTTGTGTGTGCTTGACAGTGATAGATAAGAACTGTGCTTgcattgttgtatttttgtaattggGAAAACATCTGggccttttttttcttggtgtAGGCATCAAGTAGCGGTGGGGTTTtgttgtaaacaaaaataagtcttgtccttttagtttttatgtgtgcttgtgtgtgtttatcaaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53187 False 224 lncRNA 0.57 3 13299809 13311692
TU53198 False 325 lncRNA 0.36 1 13312061 13312385
XR_006251001.1 True 1238 lncRNA 0.42 3 13299755 13312652

Neighbor

gene id symbol gene type direction distance location
steep1 zgc:103697,cunhxorf56,LOC107548454,LOC107655899,LOC101478835 coding upstream 142518 13151621 ~ 13157237 (+)
stard8 LOC107757534,LOC107596160,LOC107548495,LOC107746344,LOC107700913 coding upstream 192183 13066436 ~ 13107572 (+)
yipf6 yipf6,LOC107596694,LOC107746343,LOC107757533,LOC107596161,LOC107655918 coding upstream 243395 13051667 ~ 13056360 (+)
ar ar,LOC107757532,LOC107596701 coding upstream 276982 12965936 ~ 13022773 (+)
ch25hl3 LOC107700893,LOC107718661,LOC107597898,LOC107596167,LOC107655924,LOC107757531,LOC100005337 coding upstream 364603 12930223 ~ 12935152 (+)
nalf2 fam155b,LOC107548493,LOC107746345,LOC107655916,LOC107596158,LOC107757536 coding downstream 22103 13334755 ~ 13338138 (+)
eda eda coding downstream 29494 13342146 ~ 13372469 (+)
wnt11f2 wnt11,LOC107746349,LOC107548453,LOC107655896,LOC107596154,LOC107757514,LOC107700898 coding downstream 63885 13376537 ~ 13379768 (+)
igbp1 LOC107746347,LOC107700909,LOC107548490,LOC107655913,LOC107757539 coding downstream 70560 13383212 ~ 13387955 (+)
micu2 LOC107700905,LOC107746354,LOC107596152,LOC107655910,LOC107757544,LOC107548488 coding downstream 99968 13412620 ~ 13418968 (+)
G36062 NA non-coding upstream 190902 13108632 ~ 13108853 (+)
G35905 NA non-coding upstream 413821 12885331 ~ 12885934 (+)
G35904 NA non-coding upstream 414471 12885005 ~ 12885284 (+)
G35903 NA non-coding upstream 417243 12882260 ~ 12882512 (+)
G35847 NA non-coding upstream 531205 12767948 ~ 12768550 (+)
G36109 NA non-coding downstream 11381 13324033 ~ 13324383 (+)
G36140 NA non-coding downstream 207321 13519973 ~ 13521608 (+)
G36141 NA non-coding downstream 254325 13566977 ~ 13580798 (+)
G36168 NA non-coding downstream 335274 13647926 ~ 13648538 (+)
G36191 NA non-coding downstream 408133 13720785 ~ 13721566 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 492404 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 594510 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 770965 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 1044083 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 1356645 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 671445 13984097 ~ 13985706 (+)
G36495 NA other downstream 977768 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 987391 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 1020371 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 1034910 14347562 ~ 14349991 (+)

Expression


Co-expression Network