G36200 (eda,LOC107757537,LOC107700911)


Basic Information

Item Value
gene id G36200
gene name eda,LOC107757537,LOC107700911
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13370210 ~ 13373755 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU53349
aatttaataggacataaaaaaaaactttacaaaagaacaaaatatcttatatacatatatacagtccCTGTATagtttacaaatatacattatcTTCAGTAAAACAGGACTAGATACAGTATACAAATCACTTACCTACAAAGACAGTCGTatctaaaacacacatacacacacacacacacacacacaccagaaacaaaaactaaaacaggcTGTCGGTCGGATGTGATGtttgaggaaagaaaaaaggggGATATAAAGAACAACTCTATCAGAACACTATCACATTCAGGCTCTCCTGGTTTTACATTTCCATGTGGAGACAGGGAACACGCAGAGGAAACCTGAGGGCAGATTACCAGCTCTTTTCAGAAGGTTCCAGATAATTCCCATGCTTCTTTTTATTCCAAGACCTTTGAACACACAATAAAGCAGTTTGTTCTCACTGTGAGGATCTGATTCCTATTAACTAAACTACGCTCACataattcagtttttctctACAACCCATTCAGATCCACAATCCTGAGCTGTCACTCGGGCGCTGGAGAAGTCTCAAGGGCTGATTCATGACACTGTGATTTTTTAGCAGTATGTGTTGGAGTGAGACAGGCTCATATGTTTGGAATTGAATACTAACTTATTGCTTACTGTATACTGTGCAGTATATACTGAATACCGCCTTGTTTTTACAACCAGTATATGCAACAGAATAGATTATGAAACATGTGTTTCAGTACTCTAGTTCAGGTTGCCTGAACAATTCAGttatcagttaaaaaaaaacaaagaggatATATTTTGTATGGTGGGCTACAGTATTCAGCATATATGCTgctaagaaaacaaaagaacaacatttgaaatataaatcttccggaacaatacaaatatctttactgtaacttcaatcattttaatgcacagACATATGTGCATGTGCAGTCAAAAGATGAATCGTATTCagaataagtttttgtttacataatatgtgtactgtgtatatttattatgtatatatatatatataagtgcacactcatacagtacatattttaaaatgtttaagtatgtatataatcaatatattcattaattatacaaatattaatgttttatgaaatatatacatgcatgcatatatacatatatacacacacacacacacacacacactaaatatacacagtacacacataaataatttgacagcatatatatatatataggatgcAAAAGTAAACGAAGTACGACAGTATTCTACTCCAAACATAGCCAGACTCAGTACTTCATTTTCTAAAGAGGAGCACTGCTGTCCCCTACAGGAGGCATATGGTATTGCATCGCATATTCAGGATGATGTTAAAGACTAGGATACTGGAAGACCATTGTGGATTATCATCAATTTCAGTGCCTGAACTACTGCCACCTCACAGTTTTTCCCCCACAGGTAATTACAGATCAAGAGCAAAGAACcataaaactgtacattttcagAATTGCATGACTTCATATTAAAAATGGCTATCTTGACTGCATTTGTAAAGGTTTAGTGATAACTGAACATAGATATTCTGTTGTATACATTGCCATAATCAGTGCTTAATAGAAAAGTACACAAGTTCACTATTTATCTGCTGTTTAATCTACCGAAGTGTGTGTCTTTTATGGATTGAGCGGGCATTGAATGAATAGAGTATATTACTCCGTTCACAGTTCCAGTCTCTGCAGTCACTGCAGGTACACTTCCTCCCTGTGCTACGTGTGCCGGAtaccacatacacacacagctgagCTCATCCAGTCGCTAGGTGAAAGCTGCTAGAATGGCTGATACACAATGCATCTTGGTTATTCACTAGAAAGCCAATGTTGCGTTGTTGGTGTTTGAGGAATGACGAAGGCTGTTTCAGTGCTCAGAAAGAATCGGATGTTTTGGTCAGTGTCGGTGATGCTACATAGTCACATGTGCCTGACATCTCGGCAGATATGCAGATGAGCCCGGTCGTTCATAAATGGTTGGCTCTGTGTCCTTGGGGGGCGGTGCTAACGAGACGTACTGGCTCAGTTGAGTTCAGTGGGTGTGGTCTGTGAGCTCATCAGCgtgttgtgtgtgtctgatcgGGTCGACCCGCGCGCCGATGGGCTCAGGTGTGTCCGGCGGCCGGAGCGTCCCCTAGACGGATGCTGCCGAGGAAGGTGGTGTGGTTGCTCATGGAGATGGAGGTGTCCTCGTACACCATGCGGATGGAGATCCTCTGGCGGGCTCGCAGCAAACACACTCCGGCGGTGTAGCAGGTGTTGAACTTGCGCTGGCCCGTCTCGATGCTTCGCGTGCAGCGCAAGAATGGAGTCTTATCCACCATCACCTCATAACTCGCTATGTCCGTGAAGTTCAGGTAATATACCTGTTGGACACGCAGACACACAAAGAAAGCCAATTCGAATATGGTTACTAATCACgggaaaaatatgtatttttgtatttgaatgcaATATAGActgtatttgtatgtgtataagCAGTAGAGTTAGTCCAGGGACTGTACTCACTTCTACCtgactatatataaaatatgttccGTCAAGTAAGACTTCCAGCTCTCCGGAGCGCGAGTGCATTTTAAACACTCTCTGGTGGATTGAGATCATTCTCCAATTTTTCAGCACACCTTCTGACaaatctcacaaacagacaCCAGTAAATACTCAATCATCTGTTATGACAGCAgcgacacaaacacacaaacacaccaggGCTCAATTATAAGGTTTGCTCAGATTTCTACTTGTCTTAAAATTGTCACTGACCCTAAcaataaatgatacatttcttactaatcatttattatttaaaaacatgttattatacacacattaaaatcGCTAACTGATTAATAAcattagaatgtttttttttttaatttgaaattaaaatgtaatttattcctgtgatgcaaaatgtaattttcagcatccatttctccagtcttcagtgtcgctaGTCTTTAGAcactaaagaaatatttctttattattatccaCACTGAATAATaactgtgctgcttaatatttagtatgttttcAGGATTATGTGTTGCatataaataacagcatttattagaaacGTCTTTACtctaaaatgtcttttcttGATCAAATGATTGTGTCTTTGTTTACCCGAAGTCTTAATTTCTCAATGAAAACGGCAGtgcattttttcttcattaaatgtacatttttatttatttatttacaacagcCAGTGGGTCACCCTTATATTTGAGCCCTTCATACAAgcttaaacaaattaaaatcattccAACACACAATATCAATAAGCATTATGAAGCATATGTGGGAGATCATTATTTAACTCTTACCTTCTTTCACCTGGATAGTAGTTTCCTGACCTTGAAGATGCACCACGGCT

Function

symbol description
eda Predicted to enable death receptor agonist activity and death receptor binding activity. Acts upstream of or within bone development and odontogenesis. Predicted to be located in membrane. Predicted to be active in extracellular space. Is expressed in dental mesenchyme; integument; pharyngeal arch; and pharynx. Human ortholog(s) of this gene implicated in ectodermal dysplasia 1 and tooth agenesis. Orthologous to human EDA (ectodysplasin A).

NR:

description
PREDICTED: ectodysplasin-A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53349 True 3433 lncRNA 0.38 3 13370210 13373755

Neighbor

gene id symbol gene type direction distance location
efnb1 efnb1,LOC107746350,LOC107700912,LOC107548494,LOC107596159,LOC107757535,LOC107655917 coding downstream 66514 13270402 ~ 13303696 (-)
rxfp2l rxfp2l,LOC107655900,LOC107700901,LOC107596199,LOC107757506 coding downstream 219672 13118367 ~ 13150538 (-)
ophn1 ophn1,LOC107700916,LOC107596712,LOC107596162,LOC107655920,LOC107757505 coding downstream 319432 13020346 ~ 13050778 (-)
eda2r LOC107598184 coding downstream 415365 12943325 ~ 12954845 (-)
ttc33 ttc33,LOC107596169,LOC107757511,LOC107655901 coding downstream 458447 12894584 ~ 12911763 (-)
trnap-agg_13 NA coding upstream 1874 13375629 ~ 13375700 (-)
zgc:158432 NA coding upstream 14257 13388012 ~ 13391957 (-)
taf1 LOC107746351,LOC107700907,LOC107655912,LOC107757541 coding upstream 18901 13392656 ~ 13407947 (-)
rhogc rhogc,LOC107596156,LOC107655911,LOC107548489,LOC107700906,LOC108413814,LOC103046919,LOC105893231 coding upstream 35507 13409262 ~ 13411836 (-)
ckma ckma,LOC103045415,LOC107693439,LOC107596144,LOC107700235,LOC107548480,LOC107746363 coding upstream 143888 13517643 ~ 13521568 (-)
G36108 NA non-coding downstream 46988 13322931 ~ 13323222 (-)
G36104 NA non-coding downstream 52748 13317235 ~ 13317462 (-)
G36063 NA non-coding downstream 261262 13108699 ~ 13108948 (-)
G36048 NA non-coding downstream 313505 13055569 ~ 13056705 (-)
G36012 NA non-coding downstream 436431 12933471 ~ 12933779 (-)
G36213 NA non-coding upstream 6544 13380299 ~ 13438104 (-)
G36230 NA non-coding upstream 38889 13412644 ~ 13414387 (-)
G36229 NA non-coding upstream 41121 13414876 ~ 13418962 (-)
G36227 alkbh6,LOC107746424,LOC107700897,LOC107548452,LOC107655907 non-coding upstream 72866 13446621 ~ 13447119 (-)
G36218 LOC108260116 non-coding upstream 188899 13562654 ~ 13563898 (-)
G36047 NA other downstream 315353 13053844 ~ 13054857 (-)
G35936 NA other downstream 864252 12501914 ~ 12505958 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other downstream 1050525 12317803 ~ 12319685 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other downstream 1200800 12165403 ~ 12169410 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 1554266 11795656 ~ 11815944 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other upstream 205306 13579061 ~ 13582290 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 280539 13654294 ~ 13699226 (-)
G36298 NA other upstream 343369 13717124 ~ 13718543 (-)
G36336 NA other upstream 443987 13817742 ~ 13818942 (-)
LOC122345901 NA other upstream 471648 13845403 ~ 13848070 (-)

Expression


Co-expression Network