h3f3c (h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650)


Basic Information

Item Value
gene id h3f3c
gene name h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13579061 ~ 13582290 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU53374
GGCCGCCCCGCTCCCATTGTGTGTGAGATAGTAAATACTGACACTGCCAGACAAGCCGAGCACATATTTCACCGCGCGAATTAAAACACGTTCACCTGAGGTGATATTGATTAACAATGGCCCGTACTAAGCAGACTGCTCGTAAGTCCACCGGAGGAAAAGCTCCTCGTAAGCAGCTGGCTACCAAAGCTGCCCGCAAGAGCGCTCCCTCAACTGGAGGAGTCAAGAAACCTCACCGCTACAGGCCCGGTACTGTGGCTTTGCGTGAGATTCGTCGGTATCAGAAGTCCACTGAGCTGCTGATCCGTAAGCTGCCATTCCAGCGCCTGGTTCGAGAGATTGCCCAGGACTTCAAAACTGATCTGCGTTTCCAGAGCGCCGCCATTGGTGCACTGCAGGAGGCCAGTGAGGCATACCTGGTTGGTCTGTTTGAAGACACTAACCTGTGTGCCATCCATGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCACGCCGCATCCGCGGAGAGCGCGCTTAAACTCACCCCTTCTTTCTATTGccctctttatttctttctgtctctccacTTGTTCTCCTCCTGCTTTTCTTGGTAGAGTTTAGAGTATCAGTGATGGGGAGTAACTGTGTCTCAGTCTGCTAGTGCTGTCTAAATGACGCGTAGGGTACCTATATGTGCATGTAACAGGTGCTGTTgatcacacacgcgcacacacattcatgcacacaaacacacagacacgcatacacacacacacacacatatactcatACATTCACTTTTGGAGCGTAAACGAGGTTCACCCCTGCCCGCTTTAGGGCCACACATTTAACACGCATGTGAAGAGAAGAAGTCTCACCCTGCGCTCACACTTACTCTGCTGTCCAGAGAGAAAACAGGGTGGTGTCTGGGGTCAGTCTGCTTAAGGGGAGCGGAAACTTCCACAGCAGGGTGCTACTAAAACTGCCTCAGTCCACCTTATTGAAACCTGTCCTCACCAGTCCTCAAACTCGCATATGTTTTTAATCTCACCTCATTTGCCCTCACCTTCCTGTCCCCCTCAATCTGTCCAGTTCTTACATGTCCCGCTTGAATCCTTACTTGGCCCTTCAAAGTGGAGGTTGGTGTGGGGTCGGACTTCttctctgtgtgagtgtctgtgggTGATGTGATCAGCAAAGCAGAATCGTATTCAACTGCAAACCAGCATCTATTGGTTAAAAAGTTGTTACTTGTAATATTGATGATTGCTATTACTGTCGATatggtgtctttttttttctttttctttttttttttttttttacaatgcatacATGAATTGTTCTTTAGGGAAAAAAAGGATTAATCCGCAGAGATTTTTTGAattcgttttatttttcctttttcatattGTAGTGAAAGCCGATCCTGCTCCTCCTGTTATAACTTCAGGCAGCCACAGGGGGGCGCTCTAAACCAGCCTCTCATTCAACCTCACTGTTCGACTAACATCCTGCTCTCCCTTcctttcttcatctctctctttttctgtctctcgtTTCCACTCTTCCAATTCCAGTTTTGTCAAATTAAAGATCGGCATTAGAGTCACAGAGTGTagcaaaaaatattcttttacgTTTAATACTCTAGTACTGAGTCTTTCACTTCGTTTGGGTAGAACTTTGCTCCTTCCCTCTATTCGTGATACACAATGTAACCTCATGTTtgtgcttcttttatttttcttattcgGAAATTTAAATAAGCTGATCTTTGTATTTTCCAAATTTCTCATATTCTGGTGGTAATAAATAGATGTTACACAAATGGACTCAGTGTTATTTATAAACGCTCTCAAATTCATCATGGTTTAGTCATATGATCTAGAGtatcttttaaatgttgaaataagtAGTTATAATCCTGACAGTTAAAGaaatacatgcaaatgtattatatgtatactATTcctatatttgtaatatatatatcaatccgATATGTACATTCAAGaccagttttatttatttattttattattttggaaaatCTGAATATGCTAATGCATTATTGATAAGGAACTGAC
>XM_043240104.1
gAGGTGCATTCTGGGAGAAAATGATTGACATCGCGGCCATTTTGGCTCTGGCCGCCCCGCTCCCATTGTGTGTGAGATAGTAAATACTGACACTGCCAGACAAGCCGAGCACATATTTCACCGCGCGAATTAAAACACGTTCACCTGAGGTGATATTGATTAACAATGGCCCGTACTAAGCAGACTGCTCGTAAGTCCACCGGAGGAAAAGCTCCTCGTAAGCAGCTGGCTACCAAAGCTGCCCGCAAGAGCGCTCCCTCAACTGGAGGAGTCAAGAAACCTCACCGCTACAGGCCCGGTACTGTGGCTTTGCGTGAGATTCGTCGGTATCAGAAGTCCACTGAGCTGCTGATCCGTAAGCTGCCATTCCAGCGCCTGGTTCGAGAGATTGCCCAGGACTTCAAAACTGATCTGCGTTTCCAGAGCGCCGCCATTGGTGCACTGCAGGAGGCCAGTGAGGCATACCTGGTTGGTCTGTTTGAAGACACTAACCTGTGTGCCATCCATGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCACGCCGCATCCGCGGAGAGCGCGCTTAAACTCACCCCTTCTTTCTATTGccctctttatttctttctgtctctccacTTGTTCTCCTCCTGCTTTTCTTGGTAGAGTTTAGAGTATCAGTGATGGGGAGTAACTGTGTCTCAGTCTGCTAGTGCTGTCTAAATGACGCGTAGGGTACCTATATGTGCATGTAACAGGTGCTGTTgatcacacacgcgcacacacattcatgcacacaaacacacagacacgcatacacacacacacacacatatactcatACATTCACTTTTGGAGCGTAAACGAGGTTCACCCCTGCCCGCTTTAGGGCCACACATTTAACACGCATGTGAAGAGAAGAAGTCTCACCCTGCGCTCACACTTACTCTGCTGTCCAGAGAGAAAACAGGGTGGTGTCTGGGGTCAGTCTGCTTAAGGGGAGCGGAAACTTCCACAGCAGGGTGCTACTAAAACTGCCTCAGTCCACCTTATTGAAACCTGTCCTCACCAGTCCTCAAACTCGCATATGTTTTTAATCTCACCTCATTTGCCCTCACCTTCCTGTCCCCCTCAATCTGTCCAGTTCTTACATGTCCCGCTTGAATCCTTACTTGGCCCTTCAAAGTGGAGGTTGGTGTGGGGTCGGACTTCttctctgtgtgagtgtctgtgggTGATGTGATCAGCAAAGCAGAATCGTATTCAACTGCAAACCAGCATCTATTGGTTAAAAAGTTGTTACTTGTAATATTGATGATTGCTATTACTGTCGATatggtgtctttttttttctttttctttttttttttttttttacaatgcatacATGAATTGTTCTTTAGGGAAAAAAAGGATTAATCCGCAGAGATTTTTTGAattcgttttatttttcctttttcatattGTAGTGAAAGCCGATCCTGCTCCTCCTGTTATAACTTCAGGCAGCCACAGGGGGGCGCTCTAAACCAGCCTCTCATTCAACCTCACTGTTCGACTAACATCCTGCTCTCCCTTcctttcttcatctctctctttttctgtctctcgtTTCCACTCTTCCAATTCCAGTTTTGTCAAATTAAAGATCGGCATTAGAGTCACAGAGTGTagcaaaaaatattcttttacgTTTAATACTCTAGTACTGAGTCTTTCACTTCGTTTGGGTAGAACTTTGCTCCTTCCCTCTATTCGTGATACACAATGTAACCTCATGTTtgtgcttcttttatttttcttattcgGAAATTTAAATAAGCTGATCTTTGTATTTTCCAAATTTCTCATATTCTGGTGGTAATAAATAGATGTTACACAAA

Function

symbol description
h3f3a Part of nucleosome. Is expressed in pharyngeal arch. Orthologous to human H3-3A (H3.3 histone A).
h3f3b Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; RNA polymerase II core promoter sequence-specific DNA binding activity; and nucleosomal DNA binding activity. Involved in brain development and response to hormone. Predicted to be located in chromosome, telomeric region and nuclear chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H3-3B (H3.3 histone B).

NR:

description
PREDICTED: histone H3.3-like

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0006629 lipid metabolic process biological_process
GO:1902340 negative regulation of chromosome condensation biological_process
GO:0006997 nucleus organization biological_process
GO:0007596 blood coagulation biological_process
GO:0009725 response to hormone biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0007420 brain development biological_process
GO:0007140 male meiotic nuclear division biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007155 cell adhesion biological_process
GO:0090230 regulation of centromere complex assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0001740 Barr body cellular_component
GO:0005576 extracellular region cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005700 polytene chromosome cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53374 True 2079 TUCP 0.43 4 13579061 13582241
XM_043240104.1 False 1869 mRNA 0.46 4 13579320 13582290

Neighbor

gene id symbol gene type direction distance location
kptn kptn coding downstream 10865 13565166 ~ 13568196 (-)
ckma ckma,LOC103045415,LOC107693439,LOC107596144,LOC107700235,LOC107548480,LOC107746363 coding downstream 57493 13517643 ~ 13521568 (-)
rhogc rhogc,LOC107596156,LOC107655911,LOC107548489,LOC107700906,LOC108413814,LOC103046919,LOC105893231 coding downstream 167225 13409262 ~ 13411836 (-)
taf1 LOC107746351,LOC107700907,LOC107655912,LOC107757541 coding downstream 171114 13392656 ~ 13407947 (-)
zgc:158432 NA coding downstream 187104 13388012 ~ 13391957 (-)
ftr84 LOC107746428,LOC107700242,LOC107548471,LOC108437047 coding upstream 30371 13612661 ~ 13618357 (-)
il13ra2 LOC107700247,LOC107746374,LOC107693451,LOC107710577,LOC107548444,LOC107596132 coding upstream 64358 13646648 ~ 13653051 (-)
wdr44 LOC107548463,LOC107700250,LOC107746376 coding upstream 138491 13720781 ~ 13732483 (-)
trnam-cau_26 NA coding upstream 256600 13838890 ~ 13838962 (-)
trnam-cau_27 NA coding upstream 262597 13844887 ~ 13844959 (-)
G36218 LOC108260116 non-coding downstream 15163 13562654 ~ 13563898 (-)
G36227 alkbh6,LOC107746424,LOC107700897,LOC107548452,LOC107655907 non-coding downstream 131942 13446621 ~ 13447119 (-)
G36213 NA non-coding downstream 140957 13380299 ~ 13438104 (-)
G36229 NA non-coding downstream 160099 13414876 ~ 13418962 (-)
G36230 NA non-coding downstream 164674 13412644 ~ 13414387 (-)
LOC122345175 NA non-coding upstream 36736 13619026 ~ 13643325 (-)
G36279 NA non-coding upstream 51380 13633670 ~ 13637323 (-)
G36224 LOC107700249,LOC107746377,LOC107548465,LOC107710575,LOC105912484,LOC105027847,LOC106603104,LOC106563440 non-coding upstream 125810 13708100 ~ 13711959 (-)
G36297 NA non-coding upstream 130390 13712680 ~ 13713420 (-)
G36337 NA non-coding upstream 235958 13818248 ~ 13819334 (-)
G36047 NA other downstream 524204 13053844 ~ 13054857 (-)
G35936 NA other downstream 1073103 12501914 ~ 12505958 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other downstream 1259376 12317803 ~ 12319685 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other downstream 1409651 12165403 ~ 12169410 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 1763117 11795656 ~ 11815944 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 72004 13654294 ~ 13699226 (-)
G36298 NA other upstream 134834 13717124 ~ 13718543 (-)
G36336 NA other upstream 235452 13817742 ~ 13818942 (-)
LOC122345901 NA other upstream 263113 13845403 ~ 13848070 (-)
tmprss13b LOC107746439,LOC107663381,LOC107599230 other upstream 419644 14001934 ~ 14009536 (-)

Expression


Co-expression Network