G36227 (alkbh6,LOC107746424,LOC107700897,LOC107548452,LOC107655907)


Basic Information

Item Value
gene id G36227
gene name alkbh6,LOC107746424,LOC107700897,LOC107548452,LOC107655907
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13446621 ~ 13447119 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU53385
AAGATTAAACAACCCTGTAGAACTTTTCAACTTGGAGAggacaaatatttcaaaagcagTCACACACGATCCACCCACTGAGGTATCTAAAAGGAAGACATCCTTACAGACGCTTTGCATgtacaataatatattgtagcatttgtgcattttatttccaCGCTCTTTTGAGTGTGTAAACACGTGTAACCTGTTTGTCCGGTTCAAAGTTCAGGCAAGTCTCGGAATGTGTTACTTTTTGCCAAGCAACAAATTGGCCCGGATCACTTTGGGAACATGGCGAATGGTAAGAGAGACCCTGGTGCTACGGGACAGCGCGTCCCCCACCTGAGACCCTGCTGAGGACACATTCACCACATGCTCCGATAAAGTATCTTCACAAACTCCTTGGATACCGTGCAGATAAAGCTTGTACATGTCATCCTGGAGAATCAATAGACTTCTTCGTTGTACCAACAGTGATAGCATGTAGCGTCTTTCTTCTGTTTGAGGAATTTCA

Function

symbol description
alkbh6 Predicted to enable 2-oxoglutarate-dependent dioxygenase activity and metal ion binding activity. Predicted to be located in cytoplasm and nucleus. Orthologous to human ALKBH6 (alkB homolog 6).

NR:

description
PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53385 True 499 lncRNA 0.43 1 13446621 13447119

Neighbor

gene id symbol gene type direction distance location
rhogc rhogc,LOC107596156,LOC107655911,LOC107548489,LOC107700906,LOC108413814,LOC103046919,LOC105893231 coding downstream 34785 13409262 ~ 13411836 (-)
taf1 LOC107746351,LOC107700907,LOC107655912,LOC107757541 coding downstream 38674 13392656 ~ 13407947 (-)
zgc:158432 NA coding downstream 54664 13388012 ~ 13391957 (-)
trnap-agg_13 NA coding downstream 70921 13375629 ~ 13375700 (-)
efnb1 efnb1,LOC107746350,LOC107700912,LOC107548494,LOC107596159,LOC107757535,LOC107655917 coding downstream 142925 13270402 ~ 13303696 (-)
ckma ckma,LOC103045415,LOC107693439,LOC107596144,LOC107700235,LOC107548480,LOC107746363 coding upstream 70524 13517643 ~ 13521568 (-)
kptn kptn coding upstream 118047 13565166 ~ 13568196 (-)
ftr84 LOC107746428,LOC107700242,LOC107548471,LOC108437047 coding upstream 165542 13612661 ~ 13618357 (-)
il13ra2 LOC107700247,LOC107746374,LOC107693451,LOC107710577,LOC107548444,LOC107596132 coding upstream 199529 13646648 ~ 13653051 (-)
wdr44 LOC107548463,LOC107700250,LOC107746376 coding upstream 273662 13720781 ~ 13732483 (-)
G36213 NA non-coding downstream 8517 13380299 ~ 13438104 (-)
G36229 NA non-coding downstream 27659 13414876 ~ 13418962 (-)
G36230 NA non-coding downstream 32234 13412644 ~ 13414387 (-)
G36200 eda,LOC107757537,LOC107700911 non-coding downstream 72866 13370210 ~ 13373755 (-)
G36108 NA non-coding downstream 123399 13322931 ~ 13323222 (-)
G36218 LOC108260116 non-coding upstream 115535 13562654 ~ 13563898 (-)
LOC122345175 NA non-coding upstream 171907 13619026 ~ 13643325 (-)
G36279 NA non-coding upstream 186551 13633670 ~ 13637323 (-)
G36224 LOC107700249,LOC107746377,LOC107548465,LOC107710575,LOC105912484,LOC105027847,LOC106603104,LOC106563440 non-coding upstream 260981 13708100 ~ 13711959 (-)
G36297 NA non-coding upstream 265561 13712680 ~ 13713420 (-)
G36047 NA other downstream 391764 13053844 ~ 13054857 (-)
G35936 NA other downstream 940663 12501914 ~ 12505958 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other downstream 1126936 12317803 ~ 12319685 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other downstream 1277211 12165403 ~ 12169410 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 1630677 11795656 ~ 11815944 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other upstream 131942 13579061 ~ 13582290 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 207175 13654294 ~ 13699226 (-)
G36298 NA other upstream 270005 13717124 ~ 13718543 (-)
G36336 NA other upstream 370623 13817742 ~ 13818942 (-)
LOC122345901 NA other upstream 398284 13845403 ~ 13848070 (-)

Expression


Co-expression Network