LOC122345175


Basic Information

Item Value
gene id LOC122345175
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13619026 ~ 13643325 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU53457
GTTAGGTCAGCAGTAAGTTCTGCATACTGCAGCATTAGATAATTTCATACTATAACTGATCTAAgggcattttatttcaagtgtcTGCGACGTGCCGAATCCGACGATAACTGTTAGGTCCGTTGTGCTCATGTAAAGCATGTTCACGCTCTTTTTCCTCAGATATTTGACATTCTTGCTGGTACAAAATCGGATACCCTCTTTGACACCTTT
>XR_006250978.1
AGTAAGTTCTGCATACTGCAGCATTAGATAATTTCATACTATAACTGATCTAAgggcattttatttcaagtgtcTGCGACGTGCCGAATCCGACGATAACTGTTAGGTCCGTTGTGCTCATGTAAAGCATGTTCACGCTCTTTTTCCTCAGATATTTGACATTCTTGCTGGTACAAAATCGGATACCCTCTTTGACACCTTTAAAGGTCTGGCAGCTCATCCAGATGGCAGCTCAGCATCCTTTACCGTTCTCTCCCTGGGCCTGCAAGGACACCA

Function

GO: NA

KEGG:

id description
ko05203 Viral carcinogenesis
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU53457 False 213 lncRNA 0.41 2 13642526 13643325
XR_006250978.1 True 276 lncRNA 0.45 3 13619026 13643314

Neighbor

gene id symbol gene type direction distance location
ftr84 LOC107746428,LOC107700242,LOC107548471,LOC108437047 coding downstream 669 13612661 ~ 13618357 (-)
kptn kptn coding downstream 50830 13565166 ~ 13568196 (-)
ckma ckma,LOC103045415,LOC107693439,LOC107596144,LOC107700235,LOC107548480,LOC107746363 coding downstream 97458 13517643 ~ 13521568 (-)
rhogc rhogc,LOC107596156,LOC107655911,LOC107548489,LOC107700906,LOC108413814,LOC103046919,LOC105893231 coding downstream 207190 13409262 ~ 13411836 (-)
taf1 LOC107746351,LOC107700907,LOC107655912,LOC107757541 coding downstream 211079 13392656 ~ 13407947 (-)
il13ra2 LOC107700247,LOC107746374,LOC107693451,LOC107710577,LOC107548444,LOC107596132 coding upstream 3323 13646648 ~ 13653051 (-)
wdr44 LOC107548463,LOC107700250,LOC107746376 coding upstream 77456 13720781 ~ 13732483 (-)
trnam-cau_26 NA coding upstream 195565 13838890 ~ 13838962 (-)
trnam-cau_27 NA coding upstream 201562 13844887 ~ 13844959 (-)
chrm1b LOC107663375,LOC107548438,LOC107734116,LOC107596191,LOC107746419 coding upstream 295316 13938641 ~ 13940216 (-)
G36218 LOC108260116 non-coding downstream 55128 13562654 ~ 13563898 (-)
G36227 alkbh6,LOC107746424,LOC107700897,LOC107548452,LOC107655907 non-coding downstream 171907 13446621 ~ 13447119 (-)
G36213 NA non-coding downstream 180922 13380299 ~ 13438104 (-)
G36229 NA non-coding downstream 200064 13414876 ~ 13418962 (-)
G36230 NA non-coding downstream 204639 13412644 ~ 13414387 (-)
G36224 LOC107700249,LOC107746377,LOC107548465,LOC107710575,LOC105912484,LOC105027847,LOC106603104,LOC106563440 non-coding upstream 64775 13708100 ~ 13711959 (-)
G36297 NA non-coding upstream 69355 13712680 ~ 13713420 (-)
G36337 NA non-coding upstream 174923 13818248 ~ 13819334 (-)
G36385 LOC107596209,LOC107734118,LOC107661259 non-coding upstream 332027 13975352 ~ 13977070 (-)
G36541 NA non-coding upstream 632771 14276096 ~ 14310067 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other downstream 36736 13579061 ~ 13582290 (-)
G36047 NA other downstream 564169 13053844 ~ 13054857 (-)
G35936 NA other downstream 1113068 12501914 ~ 12505958 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other downstream 1299341 12317803 ~ 12319685 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other downstream 1449616 12165403 ~ 12169410 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 10969 13654294 ~ 13699226 (-)
G36298 NA other upstream 73799 13717124 ~ 13718543 (-)
G36336 NA other upstream 174417 13817742 ~ 13818942 (-)
LOC122345901 NA other upstream 202078 13845403 ~ 13848070 (-)
tmprss13b LOC107746439,LOC107663381,LOC107599230 other upstream 358609 14001934 ~ 14009536 (-)

Expression


Co-expression Network