LOC122345901


Basic Information

Item Value
gene id LOC122345901
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13845403 ~ 13848070 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU53547
GTCACAGGAGACCTCTGCAGACACAGTACTATTGATCTTCCTGGCAAAGTCCAACCGGCcacaaagagagacagacagagacgatGGCTGCCAGATCTATCTGCGTGCTGCTCGTGTCTGCAGTGGTGATCAATGTGACTGGAATGCTGGCAACTTGGATAATGAGTTTTCAACACTCTGACATTAGAATGAAATCTTCAATAAATTCATTCACAGTCAGCTCAGATGCAGCTCAAACAGAGACGACAACATTAGCAAGCGCATCAGATGCGGCCGAAGGTGCGTCGAGCACGCCGGAGGCACAAATAATCACAAACATTCCTGGAAGCGCATCGGTGAATGTGATGCCTGGATCATCTGCGATATCAAGAGCTTCATCCGTTGCTATCGCTGAACCCTCTCTGCAAACAACAGCTGAGACAGCAGCAGTGAGTGCAGCTGGGGCAGGGAGATCTACAGCTGGGGAAACAATCGTCTCGTCTGAGAAAGTTGAGATACACACTTTACCTGGAACAAAAAAGGACGAAATACAGGAAACGGCGGAAACAACAGCCACGGCGTGTACGCAAATACAAGAAAGTGCCAACGAGGAAACATTGACAAATACAGCTCAAAAGACGCCTGGATCTGATAGAATGAGTGAAGGTGATATcgcacaaacacatacaattaaaacagaaataagcaTCGC
>XM_043240423.1
CAACGTTTAGTGTCACAGGAGACCTCTGCAGACACAGTACTATTGATCTTCCTGGCAAAGTCCAACCGGCcacaaagagagacagacagagacgatGGCTGCCAGATCTATCTGCGTGCTGCTCGTGTCTGCAGTGGTGATCAATGTGACTGGAATGCTGGCAACTTGGATAATGAGTTTTCAACACTCTGACATTAGAATGAAATCTTCAATAAATTCATTCACAGTCAGCTCAGATGCAGCTCAAACAGAGACGACAACATTAGCAAGCGCATCAGATGCGGCCGAAGGTGCGTCGAGCACGCCGGAGGCACAAATAATCACAAACATTCCTGGAAGCGCATCGGTGAATGTGATGCCTGGATCATCTGCGATATCAAGAGCTTCATCCGTTGCTATCGCTGAACCCTCTCTGCAAACAACAGCTGAGACAGCAGCAGTGAGTGCAGCTGGGGCAGGGAGATCTACAGCTGGGGAAACAATCGTCTCGTCTGAGAAAGTTGAGATACACACTTTACCTGGAACAAAAAAGGACGAAATACAGGAAACGGCGGAAACAACAGCCACGGCGTGTACGCAAATACAAGAAAGTGCCAACGAGGAAACATTGACAAATACAGCTCAAAAGACGCCTGGATCTGATAGAATGAGTGAAGGTGATATcgcacaaacacatacaattaaaacagaaataagcaTCGCGCCCACACAGAAATCAGGGATAAGCACAACTCCACAATTCCGGAGTGTTACTCCGATACCAGTGACAGTAAGAGCAACAAATTTCATTCCCAATAAACGCAAAACTTCAAAAATCACACCCGAAATTAAAGCAACaaccaaaactgcatttttacacaCGAAAGGCAATACATTTAGGACAGAGGAGGTTATGACTGGAACAAAAGCAGATttatctgaagaaaaacaagcacCGAACACCGCCATCACAAAAAGAGCAAGAACAGCGGGAACGGGGCCACTGAAAGTTGAAACAAGCGAAAGAACCACAGTTAGACCAATAATATCTTCTCAAGCTGTAAAAGCATCAAACGGTCCAACAATGAATAGCCCTACTGGTTTAAGTCTCATAACTATGATCGAAGCTGCTGCcggaaaacaagcaaaaacagtgGGAAAACAAACTGGTAAAGGCGtgacaataacaacaattaaacccactgtaaatgatttaaacacCATTTCACAAGAGACACAGACTTTTGAAGTGTTCGAAAGTTGACAACTCTGTCACAAGTCTAATTCTCCATGTGCAGGTAAATGTGAGACAAAACCTACTACTAGGAATGCTACAGGTCATGACAAGAAGACCCTGtccaaaaaaactttttattctgCCATCACTATGGGTAGCATCTTGGTTGTATGTGGCCTTCTAGCTCTTGTTGTGTTTATAAAGGATTTTATTGTGTCTGAGTAAGATACTCTGCATATTCAGATGGTCTTGGTCTCActctattttaattttgggctatttgttttatacttaCTTTTTCTGGAAAGCACTTTggtcaacataaaaaaaaaacatttactcaccctcatggcATTCcgaatctgtatgaatttctttcttctgtggaaccaGTTTCAACTTTGTTTTGTCCATGTAACAGAAATCCGTTGTAATCAAAACTGTTTGACTACAgtcttgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53547 False 691 TUCP 0.47 4 13846378 13848059
XM_043240423.1 True 1677 mRNA 0.42 4 13845403 13848070

Neighbor

gene id symbol gene type direction distance location
trnam-cau_27 NA coding downstream 444 13844887 ~ 13844959 (-)
trnam-cau_26 NA coding downstream 6441 13838890 ~ 13838962 (-)
wdr44 LOC107548463,LOC107700250,LOC107746376 coding downstream 112920 13720781 ~ 13732483 (-)
il13ra2 LOC107700247,LOC107746374,LOC107693451,LOC107710577,LOC107548444,LOC107596132 coding downstream 192352 13646648 ~ 13653051 (-)
ftr84 LOC107746428,LOC107700242,LOC107548471,LOC108437047 coding downstream 227046 13612661 ~ 13618357 (-)
chrm1b LOC107663375,LOC107548438,LOC107734116,LOC107596191,LOC107746419 coding upstream 90571 13938641 ~ 13940216 (-)
LOC122345582 LOC107548437,LOC107746434,LOC107734131,LOC107596189,LOC107661243 coding upstream 117085 13965155 ~ 13967827 (-)
arhgap35b arhgap35,LOC107746386,LOC107596120,LOC107734134,LOC107663410,LOC108437035 coding upstream 139419 13987489 ~ 14000256 (-)
fxyd2 NA coding upstream 152489 14000559 ~ 14002075 (-)
scn4bb scn4bb,LOC107746389,LOC107599210,LOC107663372,LOC107661197,LOC107734128,LOC107596119 coding upstream 166344 14014414 ~ 14024552 (-)
G36337 NA non-coding downstream 26069 13818248 ~ 13819334 (-)
G36297 NA non-coding downstream 131983 13712680 ~ 13713420 (-)
G36224 LOC107700249,LOC107746377,LOC107548465,LOC107710575,LOC105912484,LOC105027847,LOC106603104,LOC106563440 non-coding downstream 133444 13708100 ~ 13711959 (-)
LOC122345175 NA non-coding downstream 202078 13619026 ~ 13643325 (-)
G36279 NA non-coding downstream 208080 13633670 ~ 13637323 (-)
G36385 LOC107596209,LOC107734118,LOC107661259 non-coding upstream 127282 13975352 ~ 13977070 (-)
G36541 NA non-coding upstream 428026 14276096 ~ 14310067 (-)
G36561 NA non-coding upstream 462554 14310624 ~ 14310860 (-)
G36562 NA non-coding upstream 462892 14310962 ~ 14311328 (-)
G36537 NA non-coding upstream 463698 14311768 ~ 14320994 (-)
G36336 NA other downstream 26461 13817742 ~ 13818942 (-)
G36298 NA other downstream 126860 13717124 ~ 13718543 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other downstream 146177 13654294 ~ 13699226 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other downstream 263113 13579061 ~ 13582290 (-)
G36047 NA other downstream 790546 13053844 ~ 13054857 (-)
tmprss13b LOC107746439,LOC107663381,LOC107599230 other upstream 153864 14001934 ~ 14009536 (-)
rnf214 LOC107663407,LOC107746393,LOC107599207,LOC107596114,LOC107734124,LOC107661199,LOC107599223 other upstream 192912 14040982 ~ 14056705 (-)
znhit1 znhit1,LOC107752359,LOC107661214,LOC106567874 other upstream 431604 14279674 ~ 14282620 (-)
LOC122345141 LOC107752369,LOC107661250,LOC107567461 other upstream 443993 14292063 ~ 14302381 (-)
pdzd2 pdzd2,LOC107746802,LOC107681406,LOC107661237 other upstream 1357881 15205951 ~ 15264945 (-)

Expression


Co-expression Network