G36385 (LOC107596209,LOC107734118,LOC107661259)


Basic Information

Item Value
gene id G36385
gene name LOC107596209,LOC107734118,LOC107661259
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13975352 ~ 13977070 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU53602
GaacttttgattttgattttcttgtttttcaaaCAGACATCAAAAATGGATTTCAGTGAAAGCTCAGCTTTATTGACTTCAGTGAAGAAACAAGttgcaaaagacaaaaaaagatagcaagaaaaaaactgcagacattttctgaagaaagaaagatggatacaggaaatattttttatttaaatgctctttttattattgtgtgtagCCATCTTTGGCAGTTTgtatatcatgttttttttcagtcgtGGAACAGGTCGAAGAAGCTGTGGTCGTCTGGCGCATCCTCAAATGCCACCCCCTCACAATAGGCCGGGGGAACAAAGACTTGTGGGTCATCGACTTCGGGTTCAACGCCGAAGAAACCTGAAGACAAGGTCCTTCTTCTCACCATAGTAGGAGCCAGAGACCGGCAAACAGCCACAGGAAGTGGTTGACAGAGAGTAGTGAGCTGAAAAGGAAATTGGACCATGAAGTTCAGGCAGCTTTCCGTGCCATACGCGGACTCTGAGTCCCTGCTCTGTGATGGAGGGGCTGCCCATGTAGATCTCAGACTCATGAGTTGCATCGGGTGGAATCTCCATCAGGTGCTTACGGAACTGAAGAGTCTCCTTCTTGCAACTCTCGTTTTTGCTGTCTATCTCATAAAGTACCCTCTTCAAAATGTATGAGCACATCCATATAAGAAGTTTTGTTCGCGTGAGCAGTGTCCTCCACAAAACGAAATTTATTCGCTTTGGAGTCATAACTATACTCTCCAGACGCAAGGTCATGACCCCCTGTTGAAAACCACTTTCATTGTTCCACTGGTCAGTGGTGGTGAATCTGAAAAGGAAATGTTAAAGGTAAAATGTCTTCACATAGCTTATAGCTTCAGAGAATGTTCAgatgcagaaatattacagtaaaaatcagtAGTATTACAGAAACGGATTCCTTACGACATGGCTGGCGATGAGACGAAGCCCAGGCGACAGCACAGAGGCACGAGAAAACCACACAGAGCAGCTTGACTGTATGCATCATTGCTCTCCAACTTTCTTCAGGTCCAGACACATCCACAATCATTCAGAGAGTgcgctttttatatataacccCTGCACCCCATATAAATGCCCCCTCCTTTCCACCTCCTGGACATCCAGCGATGGAATAAAC
>TU53605
GaacttttgattttgattttcttgtttttcaaaCAGACATCAAAAATGGATTTCAGTGAAAGCTCAGCTTTATTGACTTCAGTGAAGAAACAAGttgcaaaagacaaaaaaagatagcaagaaaaaaactgcagacattttctgaagaaagaaagatggatacaggaaatattttttatttaaatgctctttttattattgtgtgtagCCATCTTTGGCAGTTTgtatatcatgttttttttcagtcgtGGAACAGGTCGAAGAAGCTGTGGTCGTCTGGCGCATCCTCAAATGCCACCCCCTCACAATAGGCCGGGGGAACAAAGACTTGTGGGTCATCGACTTCGGGTTCAACGCCGAAGAAACTGAAGCAGAAAATAGCTCAGATTAATAACTGATATGTAAAGCTGCAGGATGCAACAACGCATAGACATcttcaaaatcattttcagaaaaacttGAGTTTAATCTCTGCTGTACCTGAAGACAAGGTCCTTCTTCTCACCATAGTAGGAGCCAGAGACCGGCAAACAGCCACAGGAAgtattgaCCATGAAGTTCAGGCAGCTTTCCGTGCCATACGCGGACTCTGAGTCCCTGCTCTGTGATGGAGGGGCTGCCCATGTAGATCTCAGACTCATGAGTTGCATCGGGTGGAATCTCCATCAGGTGCTTACGGAACTGAAGAGTCTCCTTCTTGCAACTCTCGTTTTTGCTGTCTATCTCATAAAGTACACCCTGTGTGGAAATAAAGTGCTTGAAAATATATtacggaaaaaaaaactacaaaaacaaaaacttgtaaatcacaagctgaaagaggaagaggaataGAGAGAGTCAGAATTGCTGATAAGGCCTACCTCTTCAAAATGTATGAGCACATCCATATAAGAAGTTTTGTTCGCGTGAGCAGTGTCCTCCACAAAACGAAATTTATTCGCTTTGGAGTCATAACTATACTCTCCAGACGCAAGGTCATGACCCCCTGTTGAAACCTGAATGTGCATTTTGCatgtgaaacaaaagaaaacagtatAAATGTTCAATGCAAAATACTATTTCTTTAGCTCTTATTAGTTCACAAATGGCGACAACATGAGGGCTTATGCATGTAATTGTATGAcgctgcatttttaaaagctcCGTTTTAAAGTTCTCTCATTACATAGTCGAAACTGTAACTATAAGTATTAAACATCTTTTTGGTATTTTGTACACTCACCACTTTCATTGTTCCACTGGTCAGTGGTGGTGAATCTGAAAAGGAAATGTTAAAGGTAAAATGTCTTCACATAGCTTATAGCTTCAGAGAATGTTCAgatgcagaaatattacagtaaaaatcagtAGTATTACAGAAACGGATTCCTTACGACATGGCTGGCGATGAGACGAAGCCCAGGCGACAGCACAGAGGCACGAGAAAACCACACAGAGCAGCTTGACTGTATGCATCATTGCTCTCCAACTTTCTTCAGGTCCAGACACATCCACAATCATTCAGAGAGTgcgctttttatatataacccCTGCACCCCATATAAATGCCCCCTCCTTTCCACCTCCTGGACATCCAGCGATGGAATAAAC
>TU53610
GaacttttgattttgattttcttgtttttcaaaCAGACATCAAAAATGGATTTCAGTGAAAGCTCAGCTTTATTGACTTCAGTGAAGAAACAAGttgcaaaagacaaaaaaagatagcaagaaaaaaactgcagacattttctgaagaaagaaagatggatacaggaaatattttttatttaaatgctctttttattattgtgtgtagCCATCTTTGGCAGTTTgtatatcatgttttttttcagtcgtGGAACAGGTCGAAGAAGCTGTGGTCGTCTGGCGCATCCTCAAATGCCACCCCCTCACAATAGGCCGGGGGAACAAAGACTTGTGGGTCATCGACTTCGGGTTCAACGCCGAAGAACTGAAGACAAGGTCCTTCTTCTCACCATAGTAGGAGCCAGAGACCGGCAAACAGCCACAGGAAGTGGTTGACAGAGAGTAGTGAGCTGAAAAGGAAATTGGACCcaccaaaaaataagcatgatattttgaaatgttaaaaagcacaatcatgaaaaaaactgtatatacataattattaaaaaaaaaggtattgaCCATGAAGTTCAGGCAGCTTTCCGTGCCATACGCGGACTCTGAGTCCCTGCTCTGTGATGGAGGGGCTGCCCATGTAGATCTCAGACTCATGAGTTGCATCGGGTGGAATCTCCATCAGGTGCTTACGGAACTGAAGAGTCTCCTTCTTGCAACTCTCGTTTTTGCTGTCTATCTCATAAAGTACACCCTGTGCCTACCTCTTCAAAATGTATGAGCACATCCATATAAGAAGTTTTGTTCGCGTGAGCAGTGTCCTCCACAAAACGAAATTTATTCGCTTTGGAGTCATAACTATACTCTCCAGACGCAAGGTCATGACCCCCTGTTGAAACACTTTCATTGTTCCACTGGTCAGTGGTGGTGAATCTGAAAAGGAAATGTTAAAGGTAAAATGTCTTCACATAGCTTATAGCTTCAGAGAATGTTCAgatgcagaaatattacagtaaaaatcagtAGTATTACAGAAACGGATTCCTTACGACATGGCTGGCGATGAGACGAAGCCCAGGCGACAGCACAGAGGCACGAGAAAACCACACAGAGCAGCTTGACTGTATGCATCATTGCTCTCCAACTTTCTTCAGGTCCAGACACATCCACAATCATTCAGAGAGTgcgctttttatatataacccCTGCACCCCATATAAATGCCCCCTCCTTTCCACCTCCTGGACATCCAGCGATGGAATAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53602 False 1158 lncRNA 0.43 5 13975352 13977070
TU53605 True 1593 lncRNA 0.40 2 13975352 13977070
TU53610 False 1260 lncRNA 0.42 4 13975352 13977070

Neighbor

gene id symbol gene type direction distance location
LOC122345582 LOC107548437,LOC107746434,LOC107734131,LOC107596189,LOC107661243 coding downstream 7525 13965155 ~ 13967827 (-)
chrm1b LOC107663375,LOC107548438,LOC107734116,LOC107596191,LOC107746419 coding downstream 35136 13938641 ~ 13940216 (-)
trnam-cau_27 NA coding downstream 130393 13844887 ~ 13844959 (-)
trnam-cau_26 NA coding downstream 136390 13838890 ~ 13838962 (-)
wdr44 LOC107548463,LOC107700250,LOC107746376 coding downstream 242869 13720781 ~ 13732483 (-)
arhgap35b arhgap35,LOC107746386,LOC107596120,LOC107734134,LOC107663410,LOC108437035 coding upstream 10419 13987489 ~ 14000256 (-)
fxyd2 NA coding upstream 23489 14000559 ~ 14002075 (-)
scn4bb scn4bb,LOC107746389,LOC107599210,LOC107663372,LOC107661197,LOC107734128,LOC107596119 coding upstream 37344 14014414 ~ 14024552 (-)
mpzl2b LOC107599229,LOC107746390,LOC107663371,LOC107596204,LOC107661261,LOC107734129 coding upstream 51347 14028417 ~ 14032586 (-)
si:ch211-284e13.4 si:ch211-284e13.4,LOC107599204,LOC107663370,LOC107746440,LOC107734146,LOC107661201,LOC107596113 coding upstream 87479 14064549 ~ 14086478 (-)
G36337 NA non-coding downstream 156018 13818248 ~ 13819334 (-)
G36297 NA non-coding downstream 261932 13712680 ~ 13713420 (-)
G36224 LOC107700249,LOC107746377,LOC107548465,LOC107710575,LOC105912484,LOC105027847,LOC106603104,LOC106563440 non-coding downstream 263393 13708100 ~ 13711959 (-)
LOC122345175 NA non-coding downstream 332027 13619026 ~ 13643325 (-)
G36279 NA non-coding downstream 338029 13633670 ~ 13637323 (-)
G36541 NA non-coding upstream 299026 14276096 ~ 14310067 (-)
G36561 NA non-coding upstream 333554 14310624 ~ 14310860 (-)
G36562 NA non-coding upstream 333892 14310962 ~ 14311328 (-)
G36537 NA non-coding upstream 334698 14311768 ~ 14320994 (-)
G36567 NA non-coding upstream 372038 14349108 ~ 14349936 (-)
LOC122345901 NA other downstream 127282 13845403 ~ 13848070 (-)
G36336 NA other downstream 156410 13817742 ~ 13818942 (-)
G36298 NA other downstream 256809 13717124 ~ 13718543 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other downstream 276126 13654294 ~ 13699226 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other downstream 393062 13579061 ~ 13582290 (-)
tmprss13b LOC107746439,LOC107663381,LOC107599230 other upstream 24864 14001934 ~ 14009536 (-)
rnf214 LOC107663407,LOC107746393,LOC107599207,LOC107596114,LOC107734124,LOC107661199,LOC107599223 other upstream 63912 14040982 ~ 14056705 (-)
znhit1 znhit1,LOC107752359,LOC107661214,LOC106567874 other upstream 302604 14279674 ~ 14282620 (-)
LOC122345141 LOC107752369,LOC107661250,LOC107567461 other upstream 314993 14292063 ~ 14302381 (-)
pdzd2 pdzd2,LOC107746802,LOC107681406,LOC107661237 other upstream 1228881 15205951 ~ 15264945 (-)

Expression


Co-expression Network