znhit1 (znhit1,LOC107752359,LOC107661214,LOC106567874)


Basic Information

Item Value
gene id znhit1
gene name znhit1,LOC107752359,LOC107661214,LOC106567874
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14279674 ~ 14282620 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU53857
TGGCGGAGAAGAAAACAGCCGTCCGCTCGCAGGATCCCAGCCAGCGGCGCGTGCTGGATAGCGCGACGCGCCAGCGCCGTTTAACCCGCCAGCTCGAGGCTCTCGAGAAAGACAACTTCCAGGACGACCCTCACGCGAGCCTCCCGCAGCTCGTCAAGCGTCTGCCGCAGTTCGACGAGAGCAACGAATCCGGCAAGCGGAGGAAGAAGACAAGGGGCGATCATTTTAAACAGAGGTTCCGCAAAAACTTCCAGACTCTCCTGGAAGAGGAGGACCTGAGTGTTAGCGAGGGCCCAAACTATCTGACTGCATGTGCTGAGCCCTCTAAGTTCCCTCAGCGACATTTCTGTGCAGTGTGCGGCTTCCCTTCAAACTACACCTGTGTGTCGTGTGGAGCTCGCTACTGCTGTGTCCGATGTTTAGGAACACACCACGAGACCAGGTGTCTAAAGTGGACGGTATAATTTGTTTCTCCAAGCTTATCTCCTATCACAAGCTCGTGTCAAACTGCAGTTCAAGTTCCTCAGAGTCATTTGCCTGCACAAACATGTTGAGGTATAAATCACTGGAAGGCTTAGACCCGGATGCTAAAATAATCTGTCATCTCTGCACCTCTTTCTACAACAAACAGGCTGCACTTCAGTCAAATTTGACACAAGGTTAAGCGTATAAAGCGTTTGCCAAAAAGTGAGGAGCTGTTGTCCTTACAAAAgttaaaacattcattcaggcatttctttatcaaaatgaaattaaatgaacctGCAGCAGCTACAATGGTTTTTGTATATGAAGTTTTGTAATTTAACACGcagtattgtttttgtatgtaaatatgtataaataattgtttctCTCACTGATATAACATTTTGTTGtctcaaacaaataaatgactagaaatggtaaaaatgtgcttgttttatgatttgtttttcaagAAGAGAGGTATTTTTAAGACTTTGCACTTTAAAATTCTAATGATGAATTTTAAGGTAAAAGCATCAATATACAcgtgtaatatattaaaataattattttcaggaAATTATATTCTCATACTTCTTAAAAATACTCTTTATACATCTTTTCATTATGAGCACTAACGTTTTAAATTCCCATCACGGATAAAGGTgataaatctttctttttttggacgGCTCAAGTTCTTTGTGTTCGTTAATAGCACATATACAGCTCCTCAGGAAGAGAGCGTCGTTCTGATTCAGACATTCACTTGGTGCATTGAGCGTATTTTTGGAGAACCGAAAAAGCTAACCCGTTCACATGGAAAACCGTACAGAAATAAGTATTTCTGTCCCACGTCGTAATTCCGGCAGTTGTTTCAATGACTTTGTGCTTTCCAGCATTTCTATATGAAGCGCAGCTCGTGTGTGTCGGCCAGTCCGCAGCTGGTTTTGTGTTCGTGGAAAAGTTCAGACAGAGACTTCATGTATAACCCGTGGTAATGATCCACCTGTTCCTGCGACGGGCTGTCCACCTGAGGCACGGTAATGGG
>XM_043238379.1
gcacAGCTGTCCGCTAGAGGTCAGTAGTGTGCAGGCGCACGATGGAGAACCCGCCACAAATCAACAGAGGAAAAGGACTGATTCTCATTTTAAACTTCCGGACATGGCGGAGAAGAAAACAGCCGTCCGCTCGCAGGATCCCAGCCAGCGGCGCGTGCTGGATAGCGCGACGCGCCAGCGCCGTTTAACCCGCCAGCTCGAGGCTCTCGAGAAAGACAACTTCCAGGACGACCCTCACGCGAGCCTCCCGCAGCTCGTCAAGCGTCTGCCGCAGTTCGACGAGAGCAACGAATCCGGTAACGAATCGAGCAAGCGGAGGAAGAAGACAAGGGGCGATCATTTTAAACAGAGGTTCCGCAAAAACTTCCAGACTCTCCTGGAAGAGGAGGACCTGAGTGTTAGCGAGGGCCCAAACTATCTGACTGCATGTGCTGAGCCCTCTAAGTTCCCTCAGCGACATTTCTGTGCAGTGTGCGGCTTCCCTTCAAACTACACCTGTGTGTCGTGTGGAGCTCGCTACTGCTGTGTCCGATGTTTAGGAACACACCACGAGACCAGGTGTCTAAAGTGGACGGTATAATTTGTTTCTCCAAGCTTATCTCCTATCACAAGCTCGTGTCAAACTGCAGTTCAAGTTCCTCAGAGTCATTTGCCTGCACAAACATGTTGAGGTATAAATCACTGGAAGGCTTAGACCCGGATGCTAAAATAATCTGTCATCTCTGCACCTCTTTCTACAACAAACAGGCTGCACTTCAGTCAAATTTGACACAAGGTTAAGCGTATAAAGCGTTTGCCAAAAAGTGAGGAGCTGTTGTCCTTACAAAAgttaaaacattcattcaggcatttctttatcaaaatgaaattaaatgaacctGCAGCAGCTACAATGGTTTTTGTATATGAAGTTTTGTAATTTAACACGcagtattgtttttgtatgtaaatatgtataaataattgtttctCTCACTGATATAACATTTTGTTGtctcaaacaaataaatgactagaaatggtaaaaa
>XM_043238380.1
gcacAGCTGTCCGCTAGAGGTCAGTAGTGTGCAGGCGCACGATGGAGAACCCGCCACAAATCAACAGAGGAAAAGGACTGATTCTCATTTTAAACTTCCGGACATGGCGGAGAAGAAAACAGCCGTCCGCTCGCAGGATCCCAGCCAGCGGCGCGTGCTGGATAGCGCGACGCGCCAGCGCCGTTTAACCCGCCAGCTCGAGGCTCTCGAGAAAGACAACTTCCAGGACGACCCTCACGCGAGCCTCCCGCAGCTCGTCAAGCGTCTGCCGCAGTTCGACGAGAGCAACGAATCCGGCAAGCGGAGGAAGAAGACAAGGGGCGATCATTTTAAACAGAGGTTCCGCAAAAACTTCCAGACTCTCCTGGAAGAGGAGGACCTGAGTGTTAGCGAGGGCCCAAACTATCTGACTGCATGTGCTGAGCCCTCTAAGTTCCCTCAGCGACATTTCTGTGCAGTGTGCGGCTTCCCTTCAAACTACACCTGTGTGTCGTGTGGAGCTCGCTACTGCTGTGTCCGATGTTTAGGAACACACCACGAGACCAGGTGTCTAAAGTGGACGGTATAATTTGTTTCTCCAAGCTTATCTCCTATCACAAGCTCGTGTCAAACTGCAGTTCAAGTTCCTCAGAGTCATTTGCCTGCACAAACATGTTGAGGTATAAATCACTGGAAGGCTTAGACCCGGATGCTAAAATAATCTGTCATCTCTGCACCTCTTTCTACAACAAACAGGCTGCACTTCAGTCAAATTTGACACAAGGTTAAGCGTATAAAGCGTTTGCCAAAAAGTGAGGAGCTGTTGTCCTTACAAAAgttaaaacattcattcaggcatttctttatcaaaatgaaattaaatgaacctGCAGCAGCTACAATGGTTTTTGTATATGAAGTTTTGTAATTTAACACGcagtattgtttttgtatgtaaatatgtataaataattgtttctCTCACTGATATAACATTTTGTTGtctcaaacaaataaatgactagaaatggtaaaaa

Function

symbol description
znhit1 Predicted to enable nucleosome binding activity. Predicted to be involved in histone exchange. Predicted to act upstream of or within chromatin remodeling. Predicted to be part of Swr1 complex. Is expressed in liver. Orthologous to human ZNHIT1 (zinc finger HIT-type containing 1).

NR:

description
PREDICTED: zinc finger HIT domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53857 True 1519 lncRNA 0.43 5 14279674 14282516
XM_043238379.1 False 1028 mRNA 0.47 5 14280281 14282620
XM_043238380.1 False 1016 mRNA 0.47 5 14280281 14282620

Neighbor

gene id symbol gene type direction distance location
LOC122344799 nyap1,LOC107746410,LOC107599218,LOC101885998,LOC107596102,LOC107661215,LOC107734142 coding downstream 5537 14240339 ~ 14274137 (-)
atp1b2b LOC107746408,LOC107599200,LOC107663400,LOC107596104,LOC107661212,LOC107734137 coding downstream 41328 14225990 ~ 14238346 (-)
chrne chrne,LOC107663376,LOC107599201,LOC108428951,LOC108260097,LOC106603603 coding downstream 59594 14212659 ~ 14220080 (-)
pld2 pld2,LOC107746406,LOC107663402,LOC107734122,LOC107661209,LOC107596108 coding downstream 67357 14191695 ~ 14212317 (-)
mink1 mink1,LOC107746403,LOC107596107 coding downstream 89202 14156523 ~ 14190472 (-)
cnot6l cnot6l,LOC107752360,LOC107663397,LOC107567468,LOC107746779 coding upstream 51598 14334218 ~ 14346680 (-)
paqr3a paqr3a,paqr3,LOC107661222,LOC107567467,LOC107599192,LOC107663396 coding upstream 210969 14493589 ~ 14500572 (-)
antxr2a antxr2,antxr2a,LOC107663391,LOC107746853,LOC107661223,LOC107602005,LOC107744869 coding upstream 290935 14573555 ~ 14616878 (-)
prkg2 prkg2,LOC107746786,LOC107599184,LOC107744862,LOC107602032 coding upstream 423757 14706377 ~ 14717330 (-)
rasgef1ba rasgef1ba,rasgef1b,LOC107599189,LOC107663389,LOC107744864,LOC107746854 coding upstream 435904 14718524 ~ 14778259 (-)
G36385 LOC107596209,LOC107734118,LOC107661259 non-coding downstream 302604 13975352 ~ 13977070 (-)
G36337 NA non-coding downstream 460340 13818248 ~ 13819334 (-)
G36297 NA non-coding downstream 566254 13712680 ~ 13713420 (-)
G36224 LOC107700249,LOC107746377,LOC107548465,LOC107710575,LOC105912484,LOC105027847,LOC106603104,LOC106563440 non-coding downstream 567715 13708100 ~ 13711959 (-)
G36279 NA non-coding downstream 642351 13633670 ~ 13637323 (-)
G36561 NA non-coding upstream 28004 14310624 ~ 14310860 (-)
G36562 NA non-coding upstream 28342 14310962 ~ 14311328 (-)
G36537 NA non-coding upstream 29148 14311768 ~ 14320994 (-)
G36567 NA non-coding upstream 66488 14349108 ~ 14349936 (-)
LOC122344807 NA non-coding upstream 181684 14464304 ~ 14467777 (-)
rnf214 LOC107663407,LOC107746393,LOC107599207,LOC107596114,LOC107734124,LOC107661199,LOC107599223 other downstream 222969 14040982 ~ 14056705 (-)
tmprss13b LOC107746439,LOC107663381,LOC107599230 other downstream 270138 14001934 ~ 14009536 (-)
LOC122345901 NA other downstream 431604 13845403 ~ 13848070 (-)
G36336 NA other downstream 460732 13817742 ~ 13818942 (-)
G36298 NA other downstream 561131 13717124 ~ 13718543 (-)
LOC122345141 LOC107752369,LOC107661250,LOC107567461 other upstream 9443 14292063 ~ 14302381 (-)
pdzd2 pdzd2,LOC107746802,LOC107681406,LOC107661237 other upstream 923331 15205951 ~ 15264945 (-)
zfr zfr,LOC107746805,LOC107681158,LOC107552600,LOC107602019 other upstream 1011236 15293856 ~ 15308440 (-)
npr3 LOC107681138,LOC107746807,LOC107552598,LOC107602007,LOC107708637,LOC107661273 other upstream 1067396 15350016 ~ 15367413 (-)
alkbh2 alkbh2,LOC107746816,LOC107552593,LOC107676640 other upstream 1285399 15568019 ~ 15578967 (-)

Expression


Co-expression Network