mrpl1 (LOC107663378,LOC107746869,LOC107752362,LOC107599195)


Basic Information

Item Value
gene id mrpl1
gene name LOC107663378,LOC107746869,LOC107752362,LOC107599195
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14347562 ~ 14349991 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU53922
ATACTATCCCAAACCTGTACACGAGGTGTCTGTGGCCATTGAAATGATGAAGAACTTTCAGAAGTTGGATTTCAGTTCTGAAAACCAGCCTGTGTATACGTCAACTTGCGTCTAGACATGAAGCTGGAGAAAAAGaaaaaagTGGATCCATTTGTTAGCACTATTAATTTACCACATCCCTTCAAGTTGGACATCAACAAAATAGT
>XM_043240110.1
AAGTGTAACACAGAAGTCTGTCAACATGGCTGCCCCCTCGAGGAGCGTTTTAAGAGTTTTACCCAGATGTCAGAGTCTGTTCTATCTGACTGCACACAGACAGCAGCAGCCTGTCAGATCCTATGCtgctgccgccgccgccgccgccaaGCATAAGGAGAAGAAAAAACGAGACCTCTCAAGAAAAAGAGgcgaaggagaaaaaaagattgatGACAAAAACCGACATAAACCCTATGGACTCACAGCCTGGGCTCCTGTAGATGATGTGTACATGGTGCGATACTATCCCAAACCTGTACACGAGGTGTCTGTGGCCATTGAAATGATGAAGAACTTTCAGAAGTTGGATTTCAGTTCTGAAAACCAGCCTGTATACGTCAACTTGCGTCTAGACATGAAGCTGGAGAAAAAGaaaaaagTGGATCCATTTGTTAGCACTATTAATTTACCACATCCCTTCAAGTTGGACATCAACAAAATAGTGGTTTTCACGAGAAATATGAATGTACAGAATCCAGATCAAGCCAGGATAGCGATGGAGAATGGAGCCGCAGTTGCAGGTGGAGCAGAACTGGTTGAGAAGATTTTAGCTGATGAGATCATTGCAGATTTTTACTTGGCTGAGCCAGGCATTGTGCAAAAGCTGCACCCTTTAAAGAATAAGCTGAGGAAGAAGTTTCCCAAGAGCAAGAGAGGATCGGTTGGAGTAAATATTCCAAAAATGCTTGAAATGTTCAAGAGTGGTCATGAATACTTGGTTGAGGACATCTATGTTAACACACAAGTTGCAACACTGGACATGCCAAAGGAGCATATTCTGGAAAACATTCATGCCATTGTAAAAGATGTGGCAAGCCATAAACCAGCAGAATTTGgtcCTTTTATCGAGCGAGCAATTGTATGCAGCAGGTCAAGTGAGGCTTTGCACATTAAATTCGAAGAACTATTACAACAGGAGGAGAAAAAAGCATAACAATTTAGCTTTGTGTATATTTGCATTGTACAAAA

Function

NR:

description
PREDICTED: 39S ribosomal protein L1, mitochondrial isoform X1

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K02863 RP-L1, MRPL1, rplA; large subunit ribosomal protein L1

RNA

RNA id representative length rna type GC content exon number start site end site
TU53922 False 206 lncRNA 0.39 2 14348245 14348789
XM_043240110.1 True 1011 mRNA 0.43 11 14347562 14349991

Neighbor

gene id symbol gene type direction distance location
LOC122344908 LOC107599196,LOC107663386 coding upstream 20795 14324343 ~ 14326767 (+)
cxcl11.8 NA coding upstream 24865 14321528 ~ 14322697 (+)
LOC122345144 NA coding upstream 26639 14315699 ~ 14320923 (+)
LOC122345143 NA coding upstream 32961 14311644 ~ 14314601 (+)
LOC122345145 NA coding upstream 37486 14306837 ~ 14310076 (+)
fras1 fras1,LOC107663364,LOC107661219,LOC107752371,LOC107746850 coding downstream 35676 14385667 ~ 14455284 (+)
LOC122345512 LOC107752366,LOC107661220,LOC107663395,LOC107599216,LOC107663363,LOC107746851 coding downstream 105426 14455417 ~ 14458914 (+)
LOC122345511 LOC107663395,LOC107599216,LOC107567471,LOC107752366,LOC107752365,LOC107661220 coding downstream 109463 14459454 ~ 14463721 (+)
bmp2k bmp2k,LOC107752364,LOC107746780,LOC107599185,LOC107661221 coding downstream 116517 14466508 ~ 14493471 (+)
prdm8b prdm8,prdm8b,LOC107744860,LOC107746783,LOC107661225,LOC107663390 coding downstream 280931 14630922 ~ 14635776 (+)
G36510 NA non-coding upstream 727 14345884 ~ 14346835 (+)
G36509 LOC107567468,LOC107752360,LOC107661217 non-coding upstream 3793 14343164 ~ 14343769 (+)
G36507 LOC107663397,LOC107567468,LOC107599188,LOC107746779 non-coding upstream 5055 14341923 ~ 14342507 (+)
G36503 LOC107599196,LOC107663386 non-coding upstream 20808 14321556 ~ 14326754 (+)
G36420 LOC107663407,LOC107599223,LOC107746393,LOC107661199 non-coding upstream 300068 14046777 ~ 14047494 (+)
G36573 NA non-coding downstream 115908 14465899 ~ 14466241 (+)
G36570 NA non-coding downstream 143557 14493548 ~ 14528933 (+)
G36644 NA non-coding downstream 377238 14727229 ~ 14727743 (+)
G36653 NA non-coding downstream 427970 14777961 ~ 14778375 (+)
G36651 wdfy3,LOC107681281,LOC107661255,LOC107744871,LOC107599213 non-coding downstream 462482 14812473 ~ 14815463 (+)
LOC122345214 NA other upstream 9797 14333023 ~ 14337765 (+)
LOC122345142 NA other upstream 42258 14300043 ~ 14305304 (+)
G36495 NA other upstream 55062 14290420 ~ 14292500 (+)
ins ins,LOC107596207 other upstream 361856 13984097 ~ 13985706 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 1540211 12803789 ~ 12807351 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other downstream 295954 14645945 ~ 14652911 (+)
G36640 NA other downstream 368541 14718532 ~ 14720487 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other downstream 2041806 16391797 ~ 16395562 (+)
G37227 NA other downstream 2124717 16474708 ~ 16560732 (+)
G37228 ncor2,LOC107742750 other downstream 2136629 16486620 ~ 16561741 (+)

Expression


Co-expression Network