G36651 (wdfy3,LOC107681281,LOC107661255,LOC107744871,LOC107599213)


Basic Information

Item Value
gene id G36651
gene name wdfy3,LOC107681281,LOC107661255,LOC107744871,LOC107599213
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14812473 ~ 14815463 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU54024
tttgtaaccaggctgttttgggtcaccattgacttctatagtagagaaaaaaaataataatggaaagAACTCTTCTGAGGACACTTGTGGTGGTAAACAGCAagtatttaattgaaattaaattaaaaagtatgagTACCATATCTATTGCGTCATAATAACAGGTACAGTATAGGGGTTATTTATGGGGGAGGGGTTCATGTAATTGTTTCTCAACACAAATATACAATGAACATTCAGCTACCACAGTTTTGCACACTAGATACTGTAGTAATGCAGTCTATCACAAGACCACCAAACAGGGACAATCCGTGTGTATTTCATCAGTCCTCAACATCCATACGTTAGAGTACAAAAAGTCAACCAAAGAGTCGTGGGACACTCTGTATATCCATCTAAAGCTGTACACAAAACCTTCAGGATCGACTCGTTAGATAATGCCATAAAAATGCgccaaagaaagagaaaacaaataaaacataatgccaAAACATGTACAATAAACTGACACAGAAAGTCAGCTGTGTTAGACATGCAACaagtaaccaaaaaaaaataaatcataaaaaagaaaacaaaataattgcataaatactTTGTACAGTTCGTCTTACTGTAAAGAAATGCACCCTTTCAAAATAATACCCcacaacataaaaatgcatctgATAAAACAGTGATTACTCcatttctttgtcttttctACATGTCAAGgtgcaaaaataatttcagaTTGATATAGCCATTTGATCTTTGAGCTGCTTGTCGACAGCAAAATCCCAACAGCTTTATGATGTTATGATTGCACGCTGAATTACAGTACATTAATATAGACTAATTCAACTATAAGGAGTGCATATTAGGCTGTTCGGAAATCATAGAACAGTGAATAAAACAACTGCAATGGTAACAAATGTTTCATCTTTTTAAAGTTGCAAGTGTCAGACcgtttaaagaaagaaaaagaaattctcTCTATTAATCAAAGCAGCACTTTTGATAGGGTATTGCCCAcagtatcaaaaaaaaaaaaaaaaaaaagactttcatAGTTTTGTCTAAGGTGAGGAGAAACTAGGCTTCCAGTCcattaaaatagataaatcCCTTTTTCTTTACACATGATAACATTCAAGCTACAGTCTTTCGTGAAATGTACGTGGAGTGAAAACATCGGTTAACTATTGCTTTCCTAATCTACAGACATTTACACTGGTGCAACATCGCAAACGGTTAAAAAGGTGAGAttttaagaataagaataaatgcatgtttttaccgAAAACGAAACCATCATTTTTAAGCTAGCGTCAGAGAGTACAATTCGGTTAATAACAGATGAAGAGTTAGTCAGAGAAAGCCCACGCTAATGCCAGACATCCCATATGAAAAAAGCAGGAAGTCTGACACTTCAGAAGCATGTTTGATATTACAGTCTTTCAGCGGTTAGAAACGTCGCTTAAATGCGGTGGAATCGTTtaaaggtcatttaaaaaaataatttaaagtggTCTTTAACATTTACATACTTTCGTCGACCTGTTAAAATAAGGTAACAGTTGCATATCAAGGCAGGTTGGCAAcaaattttaaactgaaaaagttGTCTGTGGCAACTGGCTGATACTGTGGGCAACACAAcagaacatataaaataaacataattaagcATTTGCATAACTAGACAAGCTAGTAATGTCAACCCACAAACATTTATCAACATTCATAGTCCCCAATATTATTCCCACTGGGATGCTGTGACTTGTGACAtcgactacacacacacacacacacacacactcgcagttttgttcttttaaagcCAAGATTGATTTTTAACATACTGTAATACTATATTACAAGCaatgtgttttgatttcttCTTTTATCTCTTAATAATGACTTTTTCGTTTCACTGTTTCTAGTTAAAAATGCCATTGTAAgtatttacaatataaacaaGTGTCATCTCGTTTCATCAGGAAGCGTTTTATACGCATTGCTTTTTCTAAAATCTAAACGTAATGCCGACTTGTGAATGATACCAATGAGATGACGGCGCATACtgcaaaagaaaatgcatgaatgGAAAAGTAAACTAACAATAGTCTCTTTTGAATGATCACATTTCTGCAGTGTGACAAATTATGAGCATTAGTGGCCCCATTTTTGAAGATTTTGATCAATGAGATTTAGCACGGGAGgagtgaaatgtattttttttttttttttttttttttgagggtgGTTGGGATTTTGGACTTCGGGCATGTGATGCAGGGTGAGGGGTGAACTAGTTTCTCGGGCTTTCTTCAGAGCCTCGCTCATGCTGCAGGTTGTAGTAACAGTTCTGGCAAACACGCACAGGAGAGGAGATTTTCAGACGCTTGATCTCTGACTGGAAGCGACTGCACCTGTGGGAATTCTGGCAGAAGACCTGTCCACAGTTTCTGCAGTGGTGGCGCCTTTCAGTGAGGGAGAAACGCACGGTGCATCCAGAGCAGCTGTCCACCTGCTCGTCCTTCACCCAGTGATCTGCGGTAGAGCGTCCGGGCTGGTCACTGACAGACCAGCTGAACACGCGGCCACGGCTGTCGCCTACCAGGATCTTACTGTGGTC

Function

symbol description
wdfy3 Predicted to enable metal ion binding activity. Human ortholog(s) of this gene implicated in primary autosomal dominant microcephaly 18. Orthologous to human WDFY3 (WD repeat and FYVE domain containing 3).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54024 True 2620 lncRNA 0.37 2 14812473 14815463

Neighbor

gene id symbol gene type direction distance location
tmem175 LOC107746789,LOC107663387,LOC107599180,LOC107661229,LOC107744865,LOC107602030 coding upstream 17814 14790866 ~ 14794659 (+)
bmp3 LOC107663379,LOC107599191,LOC107746787,LOC107744876 coding upstream 106178 14700904 ~ 14706295 (+)
cfap299 si:ch211-57h10.1,LOC107602013,LOC107599193,LOC107746788,LOC107663380,LOC107661266 coding upstream 113402 14654601 ~ 14699071 (+)
prdm8b prdm8,prdm8b,LOC107744860,LOC107746783,LOC107661225,LOC107663390 coding upstream 176697 14630922 ~ 14635776 (+)
bmp2k bmp2k,LOC107752364,LOC107746780,LOC107599185,LOC107661221 coding upstream 319002 14466508 ~ 14493471 (+)
cspg4ba si:dkey-193c22.2,LOC107746793,LOC107681276,LOC107744873,LOC107599179,LOC107602029 coding downstream 65412 14880875 ~ 14898825 (+)
arl15a arl15a,LOC107599176,LOC107681238,LOC107746795,LOC107661232,LOC107602028,LOC107708616 coding downstream 106109 14921572 ~ 14999417 (+)
ndufs4 ndufs4,LOC107708631,LOC107661235,LOC107602025,LOC107599174,LOC107746797 coding downstream 191144 15006607 ~ 15016753 (+)
si:dkey-3h3.3 LOC107681178 coding downstream 355598 15171061 ~ 15173837 (+)
sub1b sub1b,sub1,LOC107552599,LOC107602008,LOC107746806,LOC107661272 coding downstream 493376 15308839 ~ 15311666 (+)
G36653 NA non-coding upstream 34098 14777961 ~ 14778375 (+)
G36644 NA non-coding upstream 84730 14727229 ~ 14727743 (+)
G36570 NA non-coding upstream 283540 14493548 ~ 14528933 (+)
G36573 NA non-coding upstream 346232 14465899 ~ 14466241 (+)
G36510 NA non-coding upstream 465638 14345884 ~ 14346835 (+)
G36657 NA non-coding downstream 2276 14817739 ~ 14818269 (+)
G36692 hspb3,LOC107746796,LOC107599178,LOC107744878,LOC107602000 non-coding downstream 103492 14918955 ~ 14919941 (+)
G36732 NA non-coding downstream 213394 15028857 ~ 15029133 (+)
G36737 LOC107661270 non-coding downstream 311523 15126986 ~ 15128178 (+)
G36742 NA non-coding downstream 344834 15160297 ~ 15160709 (+)
G36640 NA other upstream 91986 14718532 ~ 14720487 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other upstream 159562 14645945 ~ 14652911 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other upstream 462482 14347562 ~ 14349991 (+)
LOC122345214 NA other upstream 474708 14333023 ~ 14337765 (+)
LOC122345142 NA other upstream 507169 14300043 ~ 14305304 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other downstream 1576334 16391797 ~ 16395562 (+)
G37227 NA other downstream 1659245 16474708 ~ 16560732 (+)
G37228 ncor2,LOC107742750 other downstream 1671157 16486620 ~ 16561741 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other downstream 2549386 17364849 ~ 17372859 (+)
LOC122345691 NA other downstream 2710561 17526024 ~ 17527444 (+)

Expression


Co-expression Network