LOC122344710 (LOC107755722,LOC107681456,LOC107700059,LOC107553585,LOC107727439)


Basic Information

Item Value
gene id LOC122344710
gene name LOC107755722,LOC107681456,LOC107700059,LOC107553585,LOC107727439
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 16253952 ~ 16256992 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU54865
GTGACTTATAGCAAACTGTTCCAGTATTGGTAAGGAGCTTCTTCAAGACGGAGGGAATGTAGTCGATGCAGGGATTGCTGCTTTACTCTGCCTAGGAGTTGTTCATCCACACACCGCTGGATTAGGTGGAGTGTTTTCTGCAATTTTGTACAATCACACAACGAGATCATTTAAAGCGATAAACGACACTTCTCAGAATCGGCCTACATATGGCGCACCCTCATTATTGCGGGGTCTTCGACTGCTGCATTCCAAATATGGGCAATTAGAATGGAGTCGACTTTTTGAGGGCGCCACGAAACTCGCTAAAGAGGGTTTCCTTATCGATCGAATCCTCTCCAGGGCTTTAGAAACCCACAAGGACAAAATACTCCAGTCGAGACTGTGCGATGTGTTCTGCGATACTAGCGGCCGTGTGAAATCAGAGGGCGAGCATGTCGCCAACGGGCATCTATCAGAACTTTTGCTGAGCGTCAGCCTAAATAGCTCCCATTTCCCGGAAAACCTGGCCGTAAAATTGGCTCAAGACATTTCTGAAGCAGAGAGAGGTCCTTTCCTTGCTGCCGCTCAGGCCAGCGGCGGAGAAATCAGTGAGCCCCTTATCGTGAAAGAGGAGAAATGCAGCGTTCTTTCAGCCCCCAACCAGCTCACAGGTAGAATGGtgtacaatatattacatagaGTCCGAGAGCAAAACCTCACTTTTCCGAGCCACAGAGATCACGATAATGCCTTTGCCTCTTATAATGCCCTCTTAAATTTGGCGAATGAATTCTTCAACACAAGTCAGAGAGACATGTTCACATTAAACACAGCAAGCAGTCATGTAGGAATTCTTGATAGCCACGGCGACTTCATGGTAATCTCCACCTCGCTCAATAGCACATGGGGATCCGGGAAATACTTACCAAGCAGCGGAGTGATTCTCAATGACTTTACCTCAGACATCACTCAGAGCCTTACTTTAGTTTTCCTCTAGTGCTAAGTATAAGTCAAGATGAGGTGGATGATCCGGAGGAGAAGCAGTTTGTTGCCGTGACCGGAGGGCTTTCTGCCCTGCTTCATTCTGTGGTTATGCTGAGAAACGTGGCCGACGCGGGACTGCCTGCCCACGAGACTGTGAGCGGCCCTCTTCTCCATATAGAGCAGGGGGGTTCCAGGTCTCTGTCTGGCTGTATATCTGGTGTCACAAACAA
>XM_043238258.1
ATGAAGACCACAAACACCATCACGAACATCATCAGGATGATGGTGACCACAATGACCACGACCATGACCACAAAGTcggagatgatgatgatcatcatcatcatgatcaTGATAGTCACACTCCATGAACACAGTCAATCGCTGTACCACAATGCCGCTATCATCACAGACTCTGCAAACTGTTCCAGTATTGGTAAGGAGCTTCTTCAAGACGGAGGGAATGTAGTCGATGCAGGGATTGCTGCTTTACTCTGCCTAGGAGTTGTTCATCCACACACCGCTGGATTAGGTGGAGTGTTTTCTGCAATTTTGTACAATCACACAACGAGATCATTTAAAGCGATAAACGACACTTCTCAGAATCGGCCTACATATGGCGCACCCTCATTATTGCGGGGTCTTCGACTGCTGCATTCCAAATATGGGCAATTAGAATGGAGTCGACTTTTTGAGGGCGCCACGAAACTCGCTAAAGAGGGTTTCCTTATCGATCGAATCCTCTCCAGGGCTTTAGAAACCCACAAGGACAAAATACTCCAGTCGAGACTGTGCGATGTGTTCTGCGATACTAGCGGCCGTGTGAAATCAGAGGGCGAGCATGTCGCCAACGGGCATCTATCAGAACTTTTGCTGAGCGTCAGCCTAAATAGCTCCCATTTCCCGGAAAACCTGGCCGTAAAATTGGCTCAAGACATTTCTGAAGCAGAGAGAGGTCCTTTCCTTGCTGCCGCTCAGGCCAGCGGCGGAGAAATCAGTGAGCCCCTTATCGTGAAAGAGGAGAAATGCAGCGTTCTTTCAGCCCCCAACCAGCTCACAGGTAGAATGGtgtacaatatattacatagaGTCCGAGAGCAAAACCTCACTTTTCCGAGCCACAGAGATCACGATAATGCCTTTGCCTCTTATAATGCCCTCTTAAATTTGGCGAATGAATTCTTCAACACAAGTCAGAGAGACATGTTCACATTAAACACAGCAAGCAGTCATGTAGGAATTCTTGATAGCCACGGCGACTTCATGGTAATCTCCACCTCGCTCAATAGCACATGGGGATCCGGGAAATACTTACCAAGCAGCGGAGTGATTCTCAATGACTTTACCTCAGACATCACTCAGCCTTACTTTAGTTTTCCTCTAGTGCTAAGTATAAGTCAAGATGAGGTGGATGATCCGGAGGAGAAGCAGTTTGTTGCCGTGACCGGAGGGCTTTCTGCCCTGCTTCATTCTGTGGTTATGCTGAGAAACGTGGCCGACGCGGGACTGCCTGCCCACGAGACTGTGAGCGGCCCTCTTCTCCATATAGAGCAGGGGGGTTCCAGGTCTCTGTCTGGCTGTATATCTGGTGTCACAAACAACACTGTCTTCCGGTTGTTTTCAGAGGAGATAAGCCTGTAGGAAGTTGGCGAGTGTTCAGATTGCTTTTTGTCCATGATTCTGCGACTGAAGGCAGAACATGTAGGAGCCTATGGAGCTCCAGCTATTGAGGTCCATGCTGACGGATACTAATGTAAAGAAGGATCTGGATAGTAATGACatatcatgtaaaaaaa

Function

NR:

description
PREDICTED: gamma-glutamyltransferase 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54865 False 1196 TUCP 0.48 2 16254149 16256739
XM_043238258.1 True 1553 mRNA 0.47 5 16253952 16256992

Neighbor

gene id symbol gene type direction distance location
si:ch211-204c21.1 LOC107746847,LOC107561610,LOC107680600,LOC107719926,LOC107660265,LOC107553608 coding downstream 115789 16115390 ~ 16138163 (-)
LOC122346134 LOC107681310 coding downstream 139528 16095748 ~ 16114424 (-)
mccc2 mccc2,LOC107746845,LOC107680610,LOC107552565,LOC107660263,LOC107553609,LOC107719925 coding downstream 158615 16089065 ~ 16095337 (-)
smn1 smn1,LOC107660268,LOC107553605,LOC107719932,LOC107681471,LOC107746843,LOC107552536 coding downstream 166542 16084818 ~ 16087410 (-)
rtkna rtkn,si:dkey-40c11.1,LOC107676668,LOC107746864,LOC107681349,LOC107718341 coding downstream 187091 16014786 ~ 16066861 (-)
LOC122344715 vps37b,LOC107673398,LOC107594993,LOC107656485,LOC107587312,LOC107709855,LOC107721558 coding upstream 156065 16413057 ~ 16416005 (-)
LOC122344899 LOC107663257,LOC107742022,LOC107570120 coding upstream 1001474 17258466 ~ 17259947 (-)
LOC122345238 cfap157,LOC107587652,LOC107672550,LOC107731015 coding upstream 1059389 17316381 ~ 17321058 (-)
LOC122344736 apba1,apba1a,LOC107587500,LOC107720269,LOC107756314,LOC107567151 coding upstream 1072204 17329196 ~ 17345615 (-)
LOC122345546 LOC107699749,LOC107587493,LOC107756319,LOC107703272,LOC107567144,LOC107720200 coding upstream 1097937 17354929 ~ 17359741 (-)
G37092 NA non-coding downstream 275212 15894684 ~ 15978740 (-)
G37098 NA non-coding downstream 315116 15938120 ~ 15938836 (-)
G37093 aqp3a,LOC107552570,LOC107746837,LOC107680708,LOC107553599 non-coding downstream 343079 15906283 ~ 15910873 (-)
G37058 LOC107718333,LOC107746835,LOC107552574,LOC107680737,LOC107676661 non-coding downstream 388792 15861077 ~ 15865160 (-)
G37064 NA non-coding downstream 440019 15812915 ~ 15813933 (-)
G37212 NA non-coding upstream 73939 16330931 ~ 16332077 (-)
G37239 NA non-coding upstream 132932 16389924 ~ 16482086 (-)
G37247 NA non-coding upstream 179477 16436469 ~ 16443757 (-)
G37249 NA non-coding upstream 217716 16474708 ~ 16485114 (-)
G37255 NA non-coding upstream 220827 16477819 ~ 16554560 (-)
cxcl20 NA other downstream 394617 15857240 ~ 15859335 (-)
cxcl11.1 LOC107680787,LOC107552555,LOC107718351,LOC107553572,LOC107676630 other downstream 398144 15854920 ~ 15855808 (-)
LOC122345695 LOC107718358,LOC107553579,LOC107676641,LOC107680767,LOC107746876 other downstream 406916 15846036 ~ 15847036 (-)
cxcl11.4 LOC107718357,LOC107746875,LOC107553578,LOC107676639,LOC107680777,LOC107552559,LOC107553571 other downstream 412274 15840326 ~ 15841678 (-)
fam222ba LOC107552581,LOC107746861,LOC107680853,LOC107676666,LOC107553569,LOC107680837,LOC107552580,LOC107746822,LOC107746829,LOC107680824,LOC107552579,LOC107676664,LOC107553594,LOC107718349 other downstream 445572 15742740 ~ 15808380 (-)
LOC122344728 uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 other upstream 119274 16376266 ~ 16378515 (-)
G37258 ncor2,LOC107687981,LOC107684513,LOC107753125 other upstream 339863 16596855 ~ 16633121 (-)
G37277 ncam1a,LOC107681081,LOC107548183,LOC107756101 other upstream 430268 16687260 ~ 16713167 (-)
LOC122345693 NA other upstream 530817 16787809 ~ 16859931 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other upstream 1089477 17346469 ~ 17350380 (-)

Expression


Co-expression Network