LOC122345998 (LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586)


Basic Information

Item Value
gene id LOC122345998
gene name LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 16391797 ~ 16395562 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU54896
AGACACATCGACCTCAGACATGTTGCCTGCCGTATCTGTTGCAGCAATGTAGGTCATTTTCTCTGGGGAGCGTGATGGTCTTGTGAAACACACCGGAGGCTGTCACTGTGGCGCGGTGCGTTTTGAGGTGTGGAGCTCTCCAGATTTACACGTGTTCAATTGCAATTGCAGTATTTGCACAAAGAAACAGAATCGCCACTTCATTGTGCCAAAATCCCAGTTCACCTTGCTGCAGGGATCAGACAACATAACCGCGtacacatttaacacacacGTGGCCAAGCACACATTCTGCAAAACGTGTGGCGTCCAGAGCTTCTACATGCCACGTTCCAACCCTGATGGATTTGgTGTGGCACCTCACTGTTTGGACCCTGGAACAGTGAGCAGTGTCACTGTAGAAGACTTCTTTGGACAGAACTGGGAGGAAAGCATGCAGAAGCATCAAACTATAAGAAGtatgtcaaaaacaacaacagacacATGACGTCTATCTATGTTTCTATCGCCCAGTTGAGCCCTATGACTTAATTGTACTCTCCTGCTTCTCAAGGCAGTTATTActgatatattaaaatcatgaaTCAAACTTTAACTTTTGAGACACCTACTGTAATGTACTTCAAATCActtaacaaatatacacatctACAAAAAGATACTGAaccaaaaatattgattaatcaATTTGTATACATGATACAGGTATACACAGGTAATCTCCCCCTAAAttacatgatttttacttaaaggaatagttcacccaaaaaatgtaaaattatggcatattttactcacccccaagccatccaagagtatatgactttcttggctgacctctgacttgACGTTATGTTAT
>XM_043240613.1
AATATAGAACGCAATGTGTGACACAGATGGCATTTCTTTGAGACACATCGACCTCAGACATGTTGCCTGCCGTATCTGTTGCAGCAATGTAGGTCATTTTCTCTGGCAGCTGAACGGGAGGAACCAGATGACGCCGAGGGCGAAATGAGCTGGCAGAAGCATGTGACCCGGCCAGTCAACAGAGCTGCTTCTGTTTTGCAAGCGGCAGTGTTGGTTATCAACAAAGTATGGAATGTTCTACATGAGAGCGTGACTTAACTGTTTAAACCGGTCAGGTTGAAGACGACGAGCAACCCCAGTTTACCACACATTAAGTTAGAAGTGCTAAACGAATGGCGTGCGTAACTAAAGACAAAAGGGAGCGTGATGGTCTTGTGAAACACACCGGAGGCTGTCACTGTGGCGCGGTGCGTTTTGAGGTGTGGAGCTCTCCAGATTTACACGTGTTCAATTGCAATTGCAGTATTTGCACAAAGAAACAGAATCGCCACTTCATTGTGCCAAAATCCCAGTTCACCTTGCTGCAGGGATCAGACAACATAACCGCGtacacatttaacacacacGTGGCCAAGCACACATTCTGCAAAACGTGTGGCGTCCAGAGCTTCTACATGCCACGTTCCAACCCTGATGGATTTGgTGTGGCACCTCACTGTTTGGACCCTGGAACAGTGAGCAGTGTCACTGTAGAAGACTTCTTTGGACAGAACTGGGAGGAAAGCATGCAGAAGCATCAAACTATAAGAAGtatgtcaaaaacaacaacagacacATGACGTCTATCTATGTTTCTATCGCCCAGTTGAGCCCTATGACTTAATTGTACTCTCCTGCTTCTCAAGGCAGTTATTActgatatattaaaatcatgaaTCAAACTTTAA

Function

NR:

description
PREDICTED: centromere protein V-like isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016846 carbon-sulfur lyase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54896 False 859 lncRNA 0.42 5 16391837 16395562
XM_043240613.1 True 887 mRNA 0.46 6 16391797 16395298

Neighbor

gene id symbol gene type direction distance location
LOC122345865 si:dkey-114c15.7,LOC107597238,LOC107672487,LOC107733230,LOC107592265,LOC107748635 coding upstream 2153 16379355 ~ 16389644 (+)
tmem8b tmem8b,si:dkey-84j12.1,LOC107553610 coding upstream 140025 16144894 ~ 16251772 (+)
LOC122345915 hspb11,zgc:158640,LOC107746844,LOC107681463,LOC107719933,LOC107660270 coding upstream 302884 16087941 ~ 16088913 (+)
nos2a nos2a,LOC107553584,LOC107719931 coding upstream 308042 16076241 ~ 16083755 (+)
si:dkey-40c11.2 LOC107680639,LOC107552538,LOC107746841 coding upstream 377382 15985786 ~ 16014415 (+)
LOC122345769 zmat4a,zmat4,LOC107594996,LOC107587306 coding downstream 4870 16400432 ~ 16409920 (+)
LOC122346216 fam101a,LOC107687957,LOC107553832,LOC107684501,LOC107576363 coding downstream 148273 16543835 ~ 16554564 (+)
edil3a edil3a,edil3,LOC107685241,LOC107669516 coding downstream 640233 17035795 ~ 17162890 (+)
LOC122344732 LOC107570126,LOC107742021,LOC107694705,LOC107675326,LOC107715436,LOC107574130 coding downstream 833832 17229394 ~ 17253899 (+)
LOC122344734 col27a1b,LOC107720245,LOC107672548,LOC107587699,LOC107699687,LOC107731038,LOC107720196,LOC107552608 coding downstream 864590 17260152 ~ 17316269 (+)
G37155 NA non-coding upstream 294792 16095985 ~ 16097005 (+)
G37123 NA non-coding upstream 337789 16053032 ~ 16054008 (+)
G37047 NA non-coding upstream 472512 15918506 ~ 15919285 (+)
G37038 NA non-coding upstream 531694 15859759 ~ 15860103 (+)
G36993 NA non-coding upstream 568046 15821892 ~ 15823751 (+)
G37260 NA non-coding downstream 264959 16660521 ~ 16660743 (+)
G37286 NA non-coding downstream 392268 16787830 ~ 16812417 (+)
G37291 NA non-coding downstream 431563 16827125 ~ 16827476 (+)
G37308 NA non-coding downstream 493635 16889197 ~ 16889977 (+)
G37330 NA non-coding downstream 955029 17350591 ~ 17350922 (+)
G36640 NA other upstream 1671310 14718532 ~ 14720487 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other upstream 1738886 14645945 ~ 14652911 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other upstream 2041806 14347562 ~ 14349991 (+)
LOC122345214 NA other upstream 2054032 14333023 ~ 14337765 (+)
LOC122345142 NA other upstream 2086493 14300043 ~ 14305304 (+)
G37227 NA other downstream 79146 16474708 ~ 16560732 (+)
G37228 ncor2,LOC107742750 other downstream 91058 16486620 ~ 16561741 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other downstream 969287 17364849 ~ 17372859 (+)
LOC122345691 NA other downstream 1130462 17526024 ~ 17527444 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other downstream 2447257 18842819 ~ 18847674 (+)

Expression


Co-expression Network