G37340


Basic Information

Item Value
gene id G37340
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17162677 ~ 17165152 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU55103
CAAAAGATTTTTCACAgatgtctttttatttgtcaaaCAAAAGAGCTGTCTACTGTATATGTTAGCAATGGCTGTCCTCCTTTGTACACTTCGCTTAAACTAATAGTGTATAATTGGTATGTTTTACCATATAGCACTTGCTTGACACGgtatgaataaaaaagaaacatgactttttttttctttcttttttttggaacagCTGACAgcataaatgcaaaacaaaaagagtaTGTGGCCCACTGGGTCTCTCTTGACTTTAactctatacatttttttcaaacgaTCACTATTCACAGCACATGTAATGGGATTGCCGGACTATCAGACCCACCGatatacatattttgttattttatttatttttcaaaaatgtgccTGTGGACctcatatttctatttttttttcttcttaatacACAGTCACCCTCAAAAGTTCTGTACAAAACTGTTAAATGTGCACACAAGTCATTTGAACAGTGTTAGAGAAGAATTTCACAGACACAGGGAAATGTTAGACAAGAATTACTgatattatttcaatatatgtCGATAATCATGATAAACATAGAAACATGATGGCAACATTTATCTCGTAGTTAAAAAATGTGGTGATGCATATGCTGAGTTTGGTGTATGATATACGCTgaattcatgtttgttttttttttttttttgtttaatcacaTTCAAGACTGTACAAATAGTGTTAAACCCCCTCCCCATCTTGGgttcttgtgtgtgtatatatattacatgtatgtCATGAGCCCTAAAAATTTTCAGAAAAgtagcaaataaaataatgcagtgATTTCACGACCCAACCCAACGGTGCTTACCTTTGAAATTAATAACTGAATTTGATAATTACCTAACTTCTGTATTCATGAAAGctgttattttgtgttaatattcCTTCACATTTtctaacaaaaacatacaaatgtgGGATTTCAAAGGGACTTTTACAATTGTAGgtactaaaaaaagaaaatgacatctATCCTGAGGTCTTTACaatcaagataaaaaaaatgaaatacagtaGTATAGGTAAACAGCCTGAAAATGGAGACATTTGGAAACTAAACAATAttgtatacataaaaaaaaaaaggaaaacatgtaaataattcatttccaagcacattattttcttaaaaatttctctgtCGTTGTTACAGACTGCCTACATAACCTGTAGGTGAATGTACCTTTACCTTCATAGCTTCCCAACAGATGTCTATGTGTGtgaaattaaaggaatagttcacccaaaaatgaaaatcctttcatcatttactcgccctcaagcagttccaaatctgtataaatttaatgccaaacacaaaggaagatattttgaggaatgtctgtaaccaggctgttttgggtcaccatagACGTCcatagtaagaaaaaaataccacAGAAGTCATTGGTGACCCAAAAGAGCATGGTTTAATTTGAACTTATACATCTTGTTGTCTTATACTTCTATTCATTTTTGCATCATGcagttattttgtgttttacatatattacaagACCATCATATTTTTTGTCCACACAACAGTGTCAGTGTCAGTTGTGACATAACTTCAGTCAGGCCTGCTGTTAAAATGAAAGTAGaaagatattttacatattaatgtttttttttctgttatgtgTTTGATTATGGTCCAAAAAGCAttgcatgtgatttttttgttctggTTTAAAGTGACACTGTACAGTGGCTATTGTTCCACTGCGAAAACCACAGTGAAATAACCCCCACcctctaataataataataataataataataataataaaaaaggatttCAATAAATGGCATAGACcataaaaggacaaaaaagcAGGGCATGAGAGATGACTAAATCCAACCTCTTTAGGgctaaaacctaaaacaaatcataatattacaaaaatggaaaattcagATGAAATGAAACCAATTTTAATTGTACATGTTTTACAAGCACAGTTTATATTGAATATGGACCAAAGTGTTGCAAAGGGATAATGAAAAGGGGTCTTCACTCTTCCTCTGTGCATCCCAGTAACTCTGCGCGCAAAGTGATTCTTCCGTACCACGACCATGGAAGAATCCGGATGAATCTGGCATAGATGGGAGGATCTATCACATTCTTTCTGTGGGTGTCATTATCAAAATTTCCTTG

Function

GO:

id name namespace
GO:0015833 peptide transport biological_process
GO:0045184 establishment of protein localization biological_process
GO:0015031 protein transport biological_process
GO:0071705 nitrogen compound transport biological_process
GO:0042886 amide transport biological_process
GO:0033036 macromolecule localization biological_process
GO:0008104 protein localization biological_process

KEGG:

id description
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU55103 True 2191 lncRNA 0.33 2 17162677 17165152

Neighbor

gene id symbol gene type direction distance location
LOC122344715 vps37b,LOC107673398,LOC107594993,LOC107656485,LOC107587312,LOC107709855,LOC107721558 coding downstream 746672 16413057 ~ 16416005 (-)
si:ch211-204c21.1 LOC107746847,LOC107561610,LOC107680600,LOC107719926,LOC107660265,LOC107553608 coding downstream 1024514 16115390 ~ 16138163 (-)
LOC122346134 LOC107681310 coding downstream 1048253 16095748 ~ 16114424 (-)
mccc2 mccc2,LOC107746845,LOC107680610,LOC107552565,LOC107660263,LOC107553609,LOC107719925 coding downstream 1067340 16089065 ~ 16095337 (-)
smn1 smn1,LOC107660268,LOC107553605,LOC107719932,LOC107681471,LOC107746843,LOC107552536 coding downstream 1075267 16084818 ~ 16087410 (-)
LOC122344899 LOC107663257,LOC107742022,LOC107570120 coding upstream 93314 17258466 ~ 17259947 (-)
LOC122345238 cfap157,LOC107587652,LOC107672550,LOC107731015 coding upstream 151229 17316381 ~ 17321058 (-)
LOC122344736 apba1,apba1a,LOC107587500,LOC107720269,LOC107756314,LOC107567151 coding upstream 164044 17329196 ~ 17345615 (-)
LOC122345546 LOC107699749,LOC107587493,LOC107756319,LOC107703272,LOC107567144,LOC107720200 coding upstream 189777 17354929 ~ 17359741 (-)
LOC122344712 ckmt2b,ckmt2,LOC107720280 coding upstream 216879 17382031 ~ 17384148 (-)
G37310 NA non-coding downstream 271487 16890704 ~ 16891190 (-)
G37309 NA non-coding downstream 272359 16889042 ~ 16890318 (-)
LOC122345772 NA non-coding downstream 303701 16858600 ~ 16858976 (-)
G37294 NA non-coding downstream 335202 16824601 ~ 16827475 (-)
G37296 NA non-coding downstream 336451 16825784 ~ 16826226 (-)
G37363 NA non-coding upstream 186163 17351315 ~ 17352410 (-)
LOC122345155 NA non-coding upstream 480944 17646096 ~ 17686024 (-)
G37427 NA non-coding upstream 503107 17668259 ~ 17692145 (-)
G37439 NA non-coding upstream 726805 17891957 ~ 17893318 (-)
G37453 adgrv1,LOC107669515,LOC107660972 non-coding upstream 781395 17946547 ~ 17946764 (-)
LOC122345693 NA other downstream 302746 16787809 ~ 16859931 (-)
G37277 ncam1a,LOC107681081,LOC107548183,LOC107756101 other downstream 449510 16687260 ~ 16713167 (-)
G37258 ncor2,LOC107687981,LOC107684513,LOC107753125 other downstream 529556 16596855 ~ 16633121 (-)
LOC122344728 uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 other downstream 784162 16376266 ~ 16378515 (-)
LOC122344710 LOC107755722,LOC107681456,LOC107700059,LOC107553585,LOC107727439 other downstream 905685 16253952 ~ 16256992 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other upstream 181317 17346469 ~ 17350380 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other upstream 2010311 19175463 ~ 19183978 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other upstream 2699867 19865019 ~ 19935576 (-)
G38058 NA other upstream 2886507 20051659 ~ 20055798 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other upstream 2960437 20125589 ~ 20127390 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030406 NA non-coding NC_007116.7 CM002889.2 46658878 ~ 46662437 (+)