LOC122344738 (acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927)


Basic Information

Item Value
gene id LOC122344738
gene name acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17346469 ~ 17350380 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU55140
tggcaggtgtgtgtgaggggtCCTAATGTTTTTAAGGGGTATCTGAAAGACCCCGAGAAGACGAAGGAGACTCTTGATGAAGATGGTTGGGTTCACACAGGAGACATTGGCAGGTGGCTGCCGaatgGCACTCTGAAGCTTGTGGACCGTAAGAAGCACATTTTTAAGCTGGCTCAGGGTGAATACATCGCTCCAGAGAAGATCGAGAACATTTACATCAGGAGTGAAGCCGTGGCGCAGGCTTTCGTTCATGGAGACAGTCTGCAGGCTTGTCTGGTAGCCATCATCGTGCCTGATCCGGACTTTCTGCCCGGCTGGGCCAAGAAGAGAGGCATGGAGGGCTCGTACGAAgaactgtgcaaaaaaaagGAAGTGAAGAAAGCCATTCTGGAAGATATTGTCAAACTGGGTAAAGAAAGTGGCCTGAAGTCTTTTGAACAGGTAAAGGACATTGCTCTTCACACCGAGATGTTCTCCATCCAAAACGGCCTCCTGACTCCCACCCTGAAAGCCAAACGCACTGACCTCAGGAACTGCTTCAGGAAACAGATCGATGAGCTTTACTCTAACATCAAAATGTAAAGTGCCTCAGATATGTTGGAGTGACAGAGCTGATCTGGGTCTCGTGACTGAAAAGAGCTGGTTCAAAACAAGAGAGAGCTtgttatatatgcatttcaGAATAAGATTATATACCTTAGATCAGCTGTTACTCGAAGCTTCATCACCCGACTTTAAAGATTCCACCTCAGGAAAACGTCCCTACATTTTGACACcgtaatttttttgcttttgactaTTTTAGGAGAAAGGGAAGAGAAATCCACAAGCACAAACAACCTAATGCTGTTATTGAGGACAGAATAAGCTtcctcttttatttaaaagcaatttttactAATGAGATGATGTAGATAACCAAACATGCCATTCTGCTTAAATTTGCTGAAGATGTACNttgctcaccaatggatcctctgaagcgaatgggtgccgtcggaatgagagtccaaccAGAGACAGATGTGGAACGCACATTTTCAGAGGAGAAtaactgtagcattgtttttcagataaacaggTATGTTAGCTTAGCATGTTTCTCATATATTATGGTATTTTTGTGCTTTAGTAGTCAAAAACTGCAACACCTTTAATGAGCTgtagtggtgtggattatttatTGAGATCAGCTTTTAGCTATttggactctgacggcacccagtcacttcagaggatccattggtaaGTAAGTGACGCattgctgcatttctccaactCCGTTcttatgaagaaacaaactcatctacatctcggatgacTTGACACCATTTTaagcaaactattcctttaatacagCAAGCCTTCATTTTTAAGTTTGTGGCCTTTctagtaaatttttttttttttttttttaactactgcTTCAGCGGCAGTACAGTAGCTATATCGTGTAATGATCTCACATCGTGTATGTGCGTGTTTGGGAAATACTGTGTACAGTCTCAGGGAAAAATGTGCCTTATTAATGGTCATCAGCTGCATCGAGTGTTGATGAGACAGGAAAACGCACACATGCGACAAAAAAAGCCAATAATTTTGTACTGTACCTCACAATCAGCATGAAGGGTGAAGCACACAGTCCATGTTAGATGGAGAGTGAGAAATATTTCATGATTTTGTCTTCCAGTAGACGGTTTTATGTCCTGAAGCCTTTAAAAAACTGTGTATCtgttattaaaggaacactagCAAAGCCGATTGTTGTTCAGC
>XM_043238290.1
ATGGGCAGACAGAGTGTACCGCGGGCTGCACCATGTCACTTCCTGGAGACTGGACAGCAGGTGTGTTGTTTCtggcaggtgtgtgtgaggggtCCTAATGTTTTTAAGGGGTATCTGAAAGACCCCGAGAAGACGAAGGAGACTCTTGATGAAGATGGTTGGGTTCACACAGGAGACATTGGCAGGTGGCTGCCGaatgGCACTCTGAAGCTTGTGGACCGTAAGAAGCACATTTTTAAGCTGGCTCAGGGTGAATACATCGCTCCAGAGAAGATCGAGAACATTTACATCAGGAGTGAAGCCGTGGCGCAGGCTTTCGTTCATGGAGACAGTCTGCAGGCTTGTCTGGTAGCCATCATCGTGCCTGATCCGGACTTTCTGCCCGGCTGGGCCAAGAAGAGAGGCATGGAGGGCTCGTACGAAgaactgtgcaaaaaaaagGAAGTGAAGAAAGCCATTCTGGAAGATATTGTCAAACTGGGTAAAGAAAGTGGCCTGAAGTCTTTTGAACAGGTAAAGGACATTGCTCTTCACACCGAGATGTTCTCCATCCAAAACGGCCTCCTGACTCCCACCCTGAAAGCCAAACGCACTGACCTCAGGAACTGCTTCAGGAAACAGATCGATGAGCTTTACTCTAACATCAAAATGTAAAGTGCCTCAGATATGTTGGAGTGACAGAGCTGATCTGGGTCTCGTGACTGAAAAGAGCTGGTTCAAAACAAGAGAGAGCTtgttatatatgcatttcaGAATAAGATTATATACCTTAGATCAGCTGTTACTCGAAGCTTCATCACCCGACTTTAAAGATTCCACCTCAGGAAAACGTCCCTACATTTTGACACcgtaatttttttgcttttgactaTTTTAGGAGAAAGGGAAGAGAAATCCACAAGCACAAACAACCTAATGCTGTTATTGAGGACAGAATAAGCTtcctcttttatttaaaagcaatttttactAATGAGATGATGTAGATAACCAAACATGCCATTCTGCTTAAATTTGCTGAAG

Function

symbol description
acsl1b Predicted to enable arachidonate-CoA ligase activity. Predicted to be involved in lipid biosynthetic process; long-chain fatty-acyl-CoA biosynthetic process; and very long-chain fatty acid metabolic process. Predicted to be active in endoplasmic reticulum and membrane. Is expressed in several structures, including cardiovascular system; neurogenic placode; peripheral olfactory organ; pleuroperitoneal region; and yolk syncytial layer. Orthologous to human ACSL1 (acyl-CoA synthetase long chain family member 1).

NR:

description
PREDICTED: long-chain-fatty-acid--CoA ligase 1-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55140 True 1773 lncRNA 0.42 5 17346469 17349966
XM_043238290.1 False 1023 mRNA 0.45 6 17347291 17350380

Neighbor

gene id symbol gene type direction distance location
LOC122344736 apba1,apba1a,LOC107587500,LOC107720269,LOC107756314,LOC107567151 coding downstream 854 17329196 ~ 17345615 (-)
LOC122345238 cfap157,LOC107587652,LOC107672550,LOC107731015 coding downstream 25411 17316381 ~ 17321058 (-)
LOC122344899 LOC107663257,LOC107742022,LOC107570120 coding downstream 86522 17258466 ~ 17259947 (-)
LOC122344715 vps37b,LOC107673398,LOC107594993,LOC107656485,LOC107587312,LOC107709855,LOC107721558 coding downstream 930464 16413057 ~ 16416005 (-)
si:ch211-204c21.1 LOC107746847,LOC107561610,LOC107680600,LOC107719926,LOC107660265,LOC107553608 coding downstream 1208306 16115390 ~ 16138163 (-)
LOC122345546 LOC107699749,LOC107587493,LOC107756319,LOC107703272,LOC107567144,LOC107720200 coding upstream 4549 17354929 ~ 17359741 (-)
LOC122344712 ckmt2b,ckmt2,LOC107720280 coding upstream 31651 17382031 ~ 17384148 (-)
ccnh ccnh,LOC107753181,LOC107553924,LOC107720191,LOC107660965 coding upstream 236443 17586823 ~ 17592357 (-)
tmem161b tmem161b,LOC107720188,LOC107660970,LOC107669514,LOC107753179,LOC107553926 coding upstream 265833 17616213 ~ 17632162 (-)
mef2cb mef2cb,mef2c,LOC107720185 coding upstream 336121 17686501 ~ 17755766 (-)
G37340 NA non-coding downstream 181317 17162677 ~ 17165152 (-)
G37310 NA non-coding downstream 455279 16890704 ~ 16891190 (-)
G37309 NA non-coding downstream 456151 16889042 ~ 16890318 (-)
LOC122345772 NA non-coding downstream 487493 16858600 ~ 16858976 (-)
G37294 NA non-coding downstream 518994 16824601 ~ 16827475 (-)
G37363 NA non-coding upstream 935 17351315 ~ 17352410 (-)
LOC122345155 NA non-coding upstream 295716 17646096 ~ 17686024 (-)
G37427 NA non-coding upstream 317879 17668259 ~ 17692145 (-)
G37439 NA non-coding upstream 541577 17891957 ~ 17893318 (-)
G37453 adgrv1,LOC107669515,LOC107660972 non-coding upstream 596167 17946547 ~ 17946764 (-)
LOC122345693 NA other downstream 486538 16787809 ~ 16859931 (-)
G37277 ncam1a,LOC107681081,LOC107548183,LOC107756101 other downstream 633302 16687260 ~ 16713167 (-)
G37258 ncor2,LOC107687981,LOC107684513,LOC107753125 other downstream 713348 16596855 ~ 16633121 (-)
LOC122344728 uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 other downstream 967954 16376266 ~ 16378515 (-)
LOC122344710 LOC107755722,LOC107681456,LOC107700059,LOC107553585,LOC107727439 other downstream 1089477 16253952 ~ 16256992 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other upstream 1825083 19175463 ~ 19183978 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other upstream 2514639 19865019 ~ 19935576 (-)
G38058 NA other upstream 2701279 20051659 ~ 20055798 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other upstream 2775209 20125589 ~ 20127390 (-)
LOC122345844 ppil3 other upstream 3044351 20394731 ~ 20396734 (-)

Expression


Co-expression Network