CI01000004_14727229_14729780


Basic Information

Item Value
gene id CI01000004_14727229_14729780
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14726932 ~ 14729895 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_14727229_14729780.mRNA
AGAGATCAGGAAGTTGAATGTCTTGATAAGTGAAGAGCAGAAAGCATCAGTAACACACAGTAAGAGCTCAGAGAACTGAGAGCATTAACACACAACTGATCTGATCTGATTCACCATGAACAAATACATGCTGCTGCTTTTCATTATGGCGTCAGATGTGACGGCTGAGGACAAAATTGAGCCAAACCGAGGGACCAAAGTCATCAAAACAGAAGGAGAGTCCGTAACACTGAGCTGCTCATATGATTCAGACAATGAATATGTATGTCTTTACTGGTACAGAAAACATTCCAATGAAGAACCTCAATATTTATTACGTGAGGGAGCTCGATCAAGCATTATAAGGCACAGAATTGATCCTCGATTTCAGTCAAAGTGCAGATCAGAAGAGAAAGTTGATCAGCCAGTCAAACATGTGACTGAAGTTGAAGGAAAATCTGTGACATTAGATTGTACATATACGACAGCTTCAGCACAGGCAAACCTCTTCTGGTACATCCAGAGAGCAAATGACTTTCCTAAATACATCCTGAGAAGGGACAAGAGACTGTGGATGAAACCATTCAGTCTGACTCTTCTCAGAGTGAACACTTGTACAATGAATCTTCATTCACTTATTCTGCTCTGTGCTTCAGCAGCTGCTGTATTTGGAAATGTCATCAAACCAAACAAAACAGATGTTTTTGCTGAGGAGGGTTCAAGTGTTACATTATCCTGTAGTTTTTCTGCCTCTGTAGGTACAGATTATCTCCACTGGTACCGTCAGTATGGAAGATCAAAACCTGAATTTCTTGTACTCACCTACAGTAATGCAAAAGAAGCTCAGGCGTCTAAAGTAGATCCAAGATTTTCTGCTAACATTATAAGAAGCGAACATGTGTATCTGGAGATCTCCTCTGCTGCAGTATCAGACTCTGCTCTGTATTACTGTGCTCTGAGGCCCACAGTCACAGGAAACACATCAGATCTATACAAAAACCTGTTACAATGAGAGAAACACAGAGATAGTGAAAATGAAGCTAGTATAAAATATGTAATGAATCTAATGCTGTCATGTGTATTCTGTTTTGGTTCTGTTCTATTTCCTGTTTCCTTCGTCCTCATTTCCCGCCTCTAGTTTGTTCCTATGGTTGTTAATTAGTTCCCCACACCTGTTCTGTTTCTACCTTGATGACCCAGTCTGTATATAAGCCCTGAGTTCTCCTTAGTTCTTTGTCCTGTATTGTTTATGGTAGAGTGCTTGTGTTCCTCTGTTATTTCTCCTGTGAACTCCCACTTTTATAATAAA

Function

NR:

description
T-cell receptor alpha variable region, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_14727229_14729780.mRNA True 1288 mRNA 0.40 5 14726932 14729895

Neighbor

gene id symbol gene type direction distance location
CI01000004_14725359_14726043 NA coding downstream 87 14725272 ~ 14726845 (-)
CI01000004_14722691_14723147 NA coding downstream 3695 14722581 ~ 14723237 (-)
CI01000004_14713133_14720728 NA coding downstream 6138 14712987 ~ 14720800 (-)
CI01000004_14709151_14709649 NA coding downstream 17213 14709059 ~ 14709719 (-)
CI01000004_14703243_14703841 NA coding downstream 22852 14703007 ~ 14704080 (-)
CI01000004_14742838_14744316 NA coding upstream 12912 14742807 ~ 14744507 (-)
CI01000004_14749034_14751685 NA coding upstream 18409 14748304 ~ 14753596 (-)
CI01000004_14754775_14755334 NA coding upstream 24852 14754747 ~ 14755749 (-)
CI01000004_14756092_14758171 NA coding upstream 25919 14755814 ~ 14758237 (-)
CI01000004_14758580_14768474 NA coding upstream 28633 14758528 ~ 14768680 (-)
G34479 NA non-coding downstream 19812 14706723 ~ 14707120 (-)
G34461 NA non-coding downstream 33614 14687437 ~ 14693318 (-)
CI01000004_14618502_14618962 NA non-coding downstream 107946 14618156 ~ 14619037 (-)
CI01000004_14612987_14614652 NA non-coding downstream 113487 14612987 ~ 14614652 (-)
G33758 NA non-coding downstream 137904 14588598 ~ 14589028 (-)
CI01000004_14770317_14773615 NA non-coding upstream 41352 14770286 ~ 14774000 (-)
CI01000004_14775109_14792782 NA non-coding upstream 44387 14774282 ~ 14792784 (-)
CI01000004_14676793_14679785 NA other downstream 47225 14676422 ~ 14679856 (-)
G34459 NA other downstream 53917 14672539 ~ 14673015 (-)
G33783 NA other downstream 88458 14637851 ~ 14638474 (-)
CI01000004_14591958_14594875 NA other downstream 131806 14591276 ~ 14594875 (-)
CI01000004_14808034_14808645 NA other upstream 78157 14807938 ~ 14808969 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015702 NA non-coding NC_007113.7 CM002886.2 36180243 ~ 36583275 (+)
eurasian perch (Perca fluviatilis) trnaw-cca_4 NA non-coding NC_053117.1 CM020914.1 8446780 ~ 8446851 (+)
tiger barb (Puntius tetrazona) LOC122327195 NA non-coding NC_056700.1 CM032069.1 16972186 ~ 16972984 (-)