G38220 (surf4l,surf4,LOC107595501,LOC107688631,LOC107740812,LOC107665048)


Basic Information

Item Value
gene id G38220
gene name surf4l,surf4,LOC107595501,LOC107688631,LOC107740812,LOC107665048
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20979109 ~ 21011904 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU56453
aataataataataaaaaaaaaaaaaaaaaaattaaacaaccaacgacatttttcttttccctttatatgtcaaaacagatttaaaacacTTAGAAAAccaatatttttgtcatttctttctattttcttaCAAAGAGGATAAACACTGAGTCTGACAAACCACAGGGTTTCAATAGTCATCTCACTCTCTGCTTGTTGAGAAACACTATAATTCACTTTTTGTAAACTTCAAAGTGACCTGACGATAGACAGCGAACACGCTAATAAACTAATAGCTCCTTACACAGACATGAGAAGCCAAATTAATCTTCAGAATGGAATGAAACGCTCTTCATAATGACCATTAAACTTTGTCTTTACATTTAACTACTTTGAAATGGTAGAAAATATTCCACGAATAAGAATTTCTCTTTGTGAAATCTTCTTGAACTTGTTTAGCCCGTTGACACGGAGAGATCGACACGTTTGTGATAGCCAGTGTGCAAAAGTTTAACACCGCAACAATATATCAGTTGAAATCCAGCTCGGAGACAGCCCGTGGAGCATGACTGACGaccccaaaaaaataataaaatgaaataaattgacTTTCCATTTTACTTCAAATTAATGACAATCAATTAAATGACTTGAACTTAAAAGAAGAAGGACATATTATCAGATGGATATGTCTTTGGTTTGCTGATTTGCAATTGGCACCGAAATAAAAAGGCAGAGAAAGATGGCAAAGGAGATCAATTTAGTTATCTTTTCAACATGGTTTTAGCTTTTATAACACGTATGCTTCTGATTTTCAGTGGGGTTCTCAAATAACAGAATCTGACCCGAAccttagaaaataaatatgacaaactAATATGTCTAAAAGTGCTGGTGAAAATGATTCAGTAAGCACGCAAGATGAAAACACAGACAGTGCATGAGATGTGGAGAGCGGGTCGTTCTGTTGGTCCTGGGGTGTTTGTGATTGGCTCTTTCCTCCCTAAGTAGTGTACCTGCTTTGTGTGAAAGCTGTTGCCAAAGGGCAAACTACCGAGTGAGCCGTTTTGAGTTCAGTCCCGTCTCACCACTCTTTCTTCTTCTCGTCCATGGACACTCCACCCGGACCTAGTGCTACTACCAGCAGAAGGCCTCCGATCACCGACGTGGTCTGGAAGAAGTCGTACTTGAGGAAGTCGTGCATGGGCTTGTAGGCTGGTATGGTCCAGAAAGCGTTGAAGTACACATTGATAGCCAGCAGCCAGATGACCAGTGTCAGGGCAGCTAGTTTAGTCTTGAAACCGATCGCTACCAGAACAATGAGAGCTGTGCCCACCAGGTTCTGCA

Function

symbol description
surf4l Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including anterior axial hypoblast; axial mesoderm; axis; digestive system; and pectoral fin. Orthologous to human SURF4 (surfeit 4).
surf4 Predicted to be located in Golgi membrane; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Orthologous to human SURF4 (surfeit 4).

NR:

description
PREDICTED: surfeit locus protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56453 True 1326 lncRNA 0.39 2 20979109 21011904

Neighbor

gene id symbol gene type direction distance location
dnm1b LOC107595502,LOC107740810 coding downstream 12185 20938891 ~ 20966924 (-)
LOC122344820 LOC107740822,LOC107745476,LOC107672521,LOC107552616,LOC107731008,LOC107587705,LOC107665020 coding downstream 253090 20722066 ~ 20726019 (-)
LOC122345835 LOC107740822,LOC107552616,LOC107665020,LOC107731008,LOC107672521,LOC107587705 coding downstream 257003 20718617 ~ 20722106 (-)
qsox2 qsox2,LOC107665046,LOC107552641,LOC107672576,LOC107731056,LOC107587664 coding downstream 261282 20706459 ~ 20717827 (-)
LOC122345826 LOC107552640,LOC107665013,LOC107731062,LOC107587663,LOC107740808,LOC559520,LOC107672520 coding downstream 275216 20700250 ~ 20703893 (-)
rab14 rab14,LOC107587668,LOC107595498,LOC108255506,LOC105889591,LOC106587009 coding upstream 57468 21069372 ~ 21074843 (-)
ttf1.6 NA coding upstream 69036 21080940 ~ 21084821 (-)
LOC122345218 timm22,LOC107740820,LOC107665041,LOC107731058,LOC107688620,LOC107587673,LOC107595490 coding upstream 165478 21177382 ~ 21179981 (-)
zswim7 zswim7,LOC107712139,LOC107665024,LOC107740465,LOC107563497,LOC107688637 coding upstream 251744 21263648 ~ 21293809 (-)
nanos2 LOC107712138,LOC107665028 coding upstream 282217 21294121 ~ 21295572 (-)
G38221 NA non-coding downstream 2436 20973965 ~ 20976673 (-)
G38218 NA non-coding downstream 92123 20885285 ~ 20886986 (-)
G38217 NA non-coding downstream 108752 20870145 ~ 20870357 (-)
LOC122345858 NA non-coding downstream 200537 20777703 ~ 20778572 (-)
LOC122345856 NA non-coding downstream 250247 20727394 ~ 20728862 (-)
G38248 NA non-coding upstream 22979 21034883 ~ 21037628 (-)
G38251 c5 non-coding upstream 28226 21040130 ~ 21040881 (-)
G38252 NA non-coding upstream 31462 21043366 ~ 21044059 (-)
G38254 NA non-coding upstream 32261 21044165 ~ 21046644 (-)
G38329 NA non-coding upstream 109212 21121116 ~ 21121412 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other downstream 43012 20906043 ~ 20936097 (-)
LOC122345844 ppil3 other downstream 582375 20394731 ~ 20396734 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other downstream 851719 20125589 ~ 20127390 (-)
G38058 NA other downstream 923311 20051659 ~ 20055798 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other downstream 1043533 19865019 ~ 19935576 (-)
G38359 NA other upstream 352334 21364238 ~ 21369048 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other upstream 600784 21612688 ~ 21619583 (-)
akap10 akap10,LOC107595480,LOC107587677 other upstream 797109 21809013 ~ 21826105 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other upstream 865177 21877081 ~ 21884022 (-)
nrgna nrgna other upstream 2115308 23127212 ~ 23132008 (-)

Expression


Co-expression Network