G38248


Basic Information

Item Value
gene id G38248
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21034883 ~ 21037628 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU56532
TTCAAACTTGTGCGCCAGGTCAACTGAACGCTTCGGCCTAACCAAGTCAGAACAAGTGcctcctacaaaaaaaaaaaaaaaaaaaagaaagaaagaaaaaaaagagtgttcGATAAAATGGTCCTGTGGTGTTTTGATGCGATAACTCACACTCTGTAACTCTACAAATGAGCATGCACCTGTCCTAGAGGTTTTGGCGTTTGCATTGGTGATGAACATAAGGCCGACTCGGTCAAACACGTCAGCATTATTTTTGCCTCCTCCTTTTCCACAACCCAAGTCACTTCGCTCAACATATTGTAGCACCTTTTTTTAGCGGGTCTTTTTCATTAGATTTCAGGCTGTACAGGGCTGTATCTACAGCAGAGAAAGCCACCAGCGAATCTATGCTTTGAGTTGACACTCTTAATTCGACTTTATCTTTGGGTTTGTAGACATGGTTGGGAACTGTTATGTCCacctgaaatatatatatatttagaaaagtcAGGACTATCACAACTACTAGCACAGCTACTGACGGCAGAGAAAAGGGCTTTACGTTTAAATTGTTAACACATTTAGCCTTCACATCAATCCACGTGGAGTCCGCCACCAGCTCAGCTTTTTCCTCCCCGTACAGGACGTAGTACACCAGTAGCCGCGCAGACGGCACCATGTCAGGGGTGATCTTAATGTTGATGTTCTGAGTCTTTTCACCATCccatttaactgttttaaactgCACAACTTTTCCTCTGGAAAGGACCTGAGAACAAACGATCGCATCATAGCAGatgatccattaaaaaaaaaaaaaggaatttgttacatttttatttatttaaattagtacttaaatgaaaaatctaaatgtttcaagattcaaataaacgctgtttTTATTAACCTTACGCCCACCGAAGATTCTTCAacaaaatgtatcatggtttccacaaaagaaTTCAGCAGCCatattaacattgataataaaagaaatattaattgtaatctgcatattagaatgacttctaaAAGATTTGTCTGACACAGATCTGTcatcaggaataaattacatttttaaaaatatgatcattattttaaaaacaaatttcacatttttacaatattacagtttttactgtatttaaatcaaatgattctTGCCTTGGCGGAAATTCTTTTCAAATCCTACCCACTTTTAAAACGGCTTTAAATGACATTGACAAAGTGATAATTGTAATGACTATgataacagcaacaaaaaagtACGTTTTAGAGAAATCTAGAATTTCTCTAAGACTGAACTTGAAAATTTGTGCCTCAAAGTGATGCTTAAAATATGTTGTCACATAAAACATTGAAAAGAGCTTAATGACTTAGCTTAACTAAAGAACTTGAAACCTGTGCTGACAATGGAGTATCAGAAGGCAAAAACTCTGCCTTTTGTAAGTCAGTTTGGATTAAAGCGCCTGCTAAacgcataaatgtaaatatattttacctgGTAGCTGAAGGTCTTTAGAGAAAGATAGTCACGGAAATCAAAGAAAACGTTGGTATAAATGTACTGTCCAACTTCAAACGCTGAGGATTCAGGTAAATCGATGTACAGGTAACGATGGTTGACGGACTCGTATGCTTCAGCCTTTAGTTTCAGTGGAGCCTGACTCCAAGAAGCATGTTGTATCTCAAACTGAAATGAAGACAATATAAATGAGTTTTTAgcatttgcatattattattttgcttaataaataattaccCGATTAAACTATTATCGCTGTATTTTTAACCCACTCTTGTTTACATCACTCAGCTCTTATGACTTACTGAAATATTCACCGATGGAGTCCCTGCAAAAAACGTTCACTCACAGTAAATTCAGCTCGTTTGACGTTAGCGGGTATATTACAGGTGAAGTAAGCGATTCCATCCCTCCCACTCGTGCTTGTCAGTGTATCCAGGTGCCCCAGGAATTTAAGGGTGTCTGGTCTGCCGTCAGCTGTGGTTACTGTTGCCCTCGTCTTGACTGGCATACCTTGCACTGGTTTACCCACAGGATCCTTCACCAAGACCTATGGGtccaaaatgtcacaaaaatgttCCGACGGATGAAACATTTAggtatatatataacaaaccaCTTGACGGGTTTCTTACTCTCATGGAGTATGGTAGACCCGGTTTGATGAAAGGAGGGGTTGAGATCAGAGTCATTGTAAACGGAGTTTCCACAAATTTCACATTTGAGATCACCGCCTCCTGGGAGATGCCACCTGACAGGGAAAGAGGGGTTTCCGGCGTCGGCAAACGGTTGtcacatttatttgctttaaaccAGAACGAGTCTGTGGAGCGAACTGGACCTACCTGTTGACTCTTGCAACAAAACTCTCACCCGAAgaaaactgttttctttcatggCACTCAGACTTTGAGGCCCGTCAGGCATGGAAGATAAAGCTGACTTGATGTCTAAGAAGACCTCTATCTGCCCATTGTTCAGCTAAAACAAAAgccaaaaacaaatgtattctCAGAACTCAAACATTACAAACGTTTTGTTGAGTGCTCACTGACCATGTATCTTTTAAACGTCTCTGGTATCATGACAGTTTCTTCTGGTGTGCTGTATCCGAACGTCAAGAAAATATCCGCAGAACTAACTGGTGTTCCATGAACGTAC

Function

GO:

id name namespace
GO:0048732 gland development biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0006508 proteolysis biological_process
GO:0001889 liver development biological_process
GO:0005579 membrane attack complex cellular_component
GO:0046930 pore complex cellular_component
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU56532 True 2668 lncRNA 0.39 2 21034883 21037628

Neighbor

gene id symbol gene type direction distance location
dnm1b LOC107595502,LOC107740810 coding downstream 67959 20938891 ~ 20966924 (-)
LOC122344820 LOC107740822,LOC107745476,LOC107672521,LOC107552616,LOC107731008,LOC107587705,LOC107665020 coding downstream 308864 20722066 ~ 20726019 (-)
LOC122345835 LOC107740822,LOC107552616,LOC107665020,LOC107731008,LOC107672521,LOC107587705 coding downstream 312777 20718617 ~ 20722106 (-)
qsox2 qsox2,LOC107665046,LOC107552641,LOC107672576,LOC107731056,LOC107587664 coding downstream 317056 20706459 ~ 20717827 (-)
LOC122345826 LOC107552640,LOC107665013,LOC107731062,LOC107587663,LOC107740808,LOC559520,LOC107672520 coding downstream 330990 20700250 ~ 20703893 (-)
rab14 rab14,LOC107587668,LOC107595498,LOC108255506,LOC105889591,LOC106587009 coding upstream 31744 21069372 ~ 21074843 (-)
ttf1.6 NA coding upstream 43312 21080940 ~ 21084821 (-)
LOC122345218 timm22,LOC107740820,LOC107665041,LOC107731058,LOC107688620,LOC107587673,LOC107595490 coding upstream 139754 21177382 ~ 21179981 (-)
zswim7 zswim7,LOC107712139,LOC107665024,LOC107740465,LOC107563497,LOC107688637 coding upstream 226020 21263648 ~ 21293809 (-)
nanos2 LOC107712138,LOC107665028 coding upstream 256493 21294121 ~ 21295572 (-)
G38220 surf4l,surf4,LOC107595501,LOC107688631,LOC107740812,LOC107665048 non-coding downstream 22979 20979109 ~ 21011904 (-)
G38221 NA non-coding downstream 58210 20973965 ~ 20976673 (-)
G38218 NA non-coding downstream 147897 20885285 ~ 20886986 (-)
G38217 NA non-coding downstream 164526 20870145 ~ 20870357 (-)
LOC122345858 NA non-coding downstream 256311 20777703 ~ 20778572 (-)
G38251 c5 non-coding upstream 2502 21040130 ~ 21040881 (-)
G38252 NA non-coding upstream 5738 21043366 ~ 21044059 (-)
G38254 NA non-coding upstream 6537 21044165 ~ 21046644 (-)
G38329 NA non-coding upstream 83488 21121116 ~ 21121412 (-)
G38330 usp2b,LOC107665042,LOC107595488 non-coding upstream 85165 21122793 ~ 21123642 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other downstream 98786 20906043 ~ 20936097 (-)
LOC122345844 ppil3 other downstream 638149 20394731 ~ 20396734 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other downstream 907493 20125589 ~ 20127390 (-)
G38058 NA other downstream 979085 20051659 ~ 20055798 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other downstream 1099307 19865019 ~ 19935576 (-)
G38359 NA other upstream 326610 21364238 ~ 21369048 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other upstream 575060 21612688 ~ 21619583 (-)
akap10 akap10,LOC107595480,LOC107587677 other upstream 771385 21809013 ~ 21826105 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other upstream 839453 21877081 ~ 21884022 (-)
nrgna nrgna other upstream 2089584 23127212 ~ 23132008 (-)

Expression


Co-expression Network