G38355 (abr,LOC107665039,LOC107595513,LOC107712163)


Basic Information

Item Value
gene id G38355
gene name abr,LOC107665039,LOC107595513,LOC107712163
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21612688 ~ 21619583 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU56743
caagtggctgtttctgtgtttgtgtgagagggAGGACACGTTACCGttccagagagaaagaaaggaagaaaaaaaacctccttGGAAAGAAGAGGTAGATTTTCAGCAGAGGCACCAATGTGTCACGGGCGGCTTGTCAAAACTTGAAAGGAGGGAAAGCAGCAAGTGAAACggagggagaggagagagagggatcgGCCGTCAGCatggaggaggatgaggaggaggcgCTGGGGTTTTTGGACAAAGTTCTGGAGGATGAAGATGTGTTTGACAGTGAGATGGACTTGGACAGTCCGTTCACACCGGTGGACTTCAGGACGTTCAAGgGAGACATAGAGAAAGGTCTGGAGATGAAGAAACTGGTTCTGTCTGGTTTTCTGGCCAGTGAGGAGATCTATATTAACCAGCTAGAGGCGTTGCTGCTGCCCATGAAACCTCTTAAAGCCACAGCTACTACATCAAAGCCAGTGCTGACAATGGAGCAGATTGACACTATTTTCTTCATGATCCAAGACATCTTTGAGATACATAAGGAGTTTTATGATGCTCTTTCTCCCAACATTCAGCAGTGGGATGAGAAGGTCACTGTCGGACATCTTTTCCAGAAACTGG

Function

symbol description
abr Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within intracellular signal transduction and positive regulation of GTPase activity. Predicted to be located in cell projection and synapse. Predicted to be active in membrane. Orthologous to human ABR (ABR activator of RhoGEF and GTPase).

NR:

description
PREDICTED: active breakpoint cluster region-related protein isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56743 True 615 TUCP 0.48 3 21612688 21619583

Neighbor

gene id symbol gene type direction distance location
LOC122345264 si:ch211-253h3.1,abr,LOC106567975 coding downstream 301287 21296259 ~ 21311401 (-)
nanos2 LOC107712138,LOC107665028 coding downstream 317116 21294121 ~ 21295572 (-)
zswim7 zswim7,LOC107712139,LOC107665024,LOC107740465,LOC107563497,LOC107688637 coding downstream 318879 21263648 ~ 21293809 (-)
LOC122345218 timm22,LOC107740820,LOC107665041,LOC107731058,LOC107688620,LOC107587673,LOC107595490 coding downstream 432707 21177382 ~ 21179981 (-)
ttf1.6 NA coding downstream 527867 21080940 ~ 21084821 (-)
aspa aspa,LOC107665049,LOC107712162,LOC107595485,LOC107587675,LOC107688617,LOC107731059 coding upstream 58656 21678239 ~ 21685667 (-)
pho NA coding upstream 66617 21686200 ~ 21695167 (-)
LOC122344645 LOC107587678,LOC107712159,LOC107690212,LOC100004180,LOC106567973,LOC106603516,LOC108427286,LOC103045102 coding upstream 84618 21704201 ~ 21808104 (-)
selenow1 sepw1,LOC107685796,LOC107587735 coding upstream 208023 21827606 ~ 21829682 (-)
ehd2a ehd2a,LOC107595479,LOC107712157,LOC107685737,LOC107740518,LOC107587717,LOC107690215 coding upstream 210126 21829709 ~ 21834433 (-)
G38347 LOC107587672,LOC107731042,LOC107688619,LOC107665038 non-coding downstream 198419 21410985 ~ 21414269 (-)
G38342 fam57a,LOC107740818,LOC107665040,LOC107688621,LOC107595489,LOC107731057,LOC107587715 non-coding downstream 233506 21172678 ~ 21379182 (-)
LOC122345899 NA non-coding downstream 250565 21361011 ~ 21362123 (-)
G38334 NA non-coding downstream 460845 21149938 ~ 21151843 (-)
G38330 usp2b,LOC107665042,LOC107595488 non-coding downstream 489046 21122793 ~ 21123642 (-)
G38507 zgc:85789,c28h11orf54,LOC107709398,LOC107690214,LOC107587676,LOC107712137,LOC107685814 non-coding upstream 76745 21696328 ~ 21697193 (-)
G38510 sepw1,LOC107685796,LOC107587735 non-coding upstream 201893 21821476 ~ 21829732 (-)
LOC122345027 NA non-coding upstream 216730 21836313 ~ 21840100 (-)
G38515 LOC107712155,LOC107595525,LOC107685724 non-coding upstream 219776 21839359 ~ 21839673 (-)
G38521 NA non-coding upstream 247545 21867128 ~ 21867461 (-)
G38359 NA other downstream 243640 21364238 ~ 21369048 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other downstream 676591 20906043 ~ 20936097 (-)
LOC122345844 ppil3 other downstream 1215954 20394731 ~ 20396734 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other downstream 1485298 20125589 ~ 20127390 (-)
G38058 NA other downstream 1556890 20051659 ~ 20055798 (-)
akap10 akap10,LOC107595480,LOC107587677 other upstream 189430 21809013 ~ 21826105 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other upstream 257498 21877081 ~ 21884022 (-)
nrgna nrgna other upstream 1507629 23127212 ~ 23132008 (-)
LOC122345364 NA other upstream 1982653 23602236 ~ 23605748 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other upstream 2132297 23751880 ~ 23756588 (-)

Expression


Co-expression Network