LOC122344815


Basic Information

Item Value
gene id LOC122344815
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 22038360 ~ 22041267 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU57040
CTCAGCTTCAACGCGTCTGCGAGTGTTAGTCAAGAAGGCTGGCTTAAACCTAGGATTTTGGGCATATCCATGTTGTTTGAAGTGCGTAGTCACCAACATGTGCGGAATGGTTTCGGGTGACATTAATGATCCTCCCGTGAACGAACTGGGCAATCGGGCTCCAGAACACAATGTGGGTGGATAATCCTGCGAGTTGATGCATAACCTGCCCCTGCAGTAGCTTGTTCTAATgGTGATGTGAAGGATGTCCACTAGAGGGCGCAACACCCTTTTGGTGTTTAGAAGTGTTGGAGGTCCCATATGACTAGACTGAAGAATGAATGCTGGCAGCTGATTGCTCTGACAGTACTGAGACGAAAAGTTACAGGTACGGTGTTGGAGTAAAGGCTTTCCCAGCCAGACTCTTCTTGGAAGTTGGTGCTGGTGAGGAGAGCATACTGTACAGGAAATCTGGAAAGCTTCCGttttca
>TU57041
CTCAGCTTCAACGCGTCTGCGAGTGTTAGTCAAGAAGGCTGGCTTAAACCTAGGATTTTGGGCATATCCATGTTGTTTGAAGTGCGTAGTCACCAACATGTGCGGAATGGTTTCGGGTGACATTAATGATCCTCCCGTGAACGAACTGGGCAATCGGGCTCCAGAACACAATGTGGGTGGATAATCCTGCGAGTTGATGCATAACCTGCCCCTGCAGTAGCTTGTTCTAATgGTGATGTGAAGGATGTCCACTAGAGGGCGCAACACCCTTTTGGTGTTTAGAAGTGTTGGAGGTCCCATATGACTAGACTGAAGAATGAATGCTGGCAGCTGATTGCTCTGACAGTACTGAGACGAAAAGTTACAGGTACGGTGTTGGAGTAAAGGCTTTCCCAGCCAGACTCTTCTTGGAAGGTGAGGGCTGTTCCACATCTTTGGATCACTTTCAAAGGGGGTCAGCCACTTCTTTTCACTGGTGACCCTTAACGCCGTGATCCTACATCAGTGCCCTATGAGATTTGCTTGGGGGTAGTTTTGTGCTAAAACTACTTTTGCTTTTCTTAAGGGCAACATCTAATTCAATTAAAGCAATATCATTTGtcatggtatgaatgcaattTTGTTCGCCTTTTCAACAGTTGGTGCTGGTGAGGAGAGCATACTGTACAGGAAATCTGGAAAGCTTCCGttttca
>XR_006250930.1
CGTAAATCGGATATAAAAGGTGACGCTTTTTCCCTTCCGTCCTTCTCAGCTTCAACGCGTCTGCGAGTGTTAGTCAAGAAGGCTGGCTTAAACCTAGGATTTTGGGCATATCCATGTTGTTTGAAGTGCGTAGTCACCAACATGTGCGGAATGGTTTCGGGTGACATTAATGATCCTCCCGTGAACGAACTGGGCAATCGGGCTCCAGAACACAATGTGGGTGGATAATCCTGCGAGTTGATGCATAACCTGCCCCTGCAGTAGCTTGTTCTAATgGTGATGTGAAGGATGTCCACTAGAGGGCGCAACACCCTTTTGGTGTTTAGAAGTGTTGGAGGTCCCATATGACTAGACTGAAGAATGAATGCTGGCAGCTGATTGCTCTGACAGTACTGAGACGAAAAGGCATGTTCTTAAACGTTTCACAGTTGCATGTGTATGAAGTTGGTCATATACCAAGGCTTTTAGGATACCTGGTTCCTGACTTGCTGTGGACTTgaccaaaaattaaaatcctgATAACACCCTACAGTTTGCTGTTGGGTTTTATTAGGAACATTTTTCCTCTTATGCTCTTAATCTGAAAATGGGAGGTCTTACATGTTTAATTGTTTATGCAGTTACAGGTACGGTGTTGGAGTAAAGGCTTTCCCAGCCAGACTCTTCTTGGAAGGTGAGGGCTGTTCCACATCTTTGGATCACTTTCAAAGGGGGTCAGCCACTTCTTTTCACTGGTGACCCTTAACGCCGTGATCCTACATCAGTGCCCTATGAGATTTGCTTGGGGGTAGTTTTGTGCTAAAACTACTTTTGCTTTTCTTAAGGGCAACATCTAATTCAATTAAAGCAATATCATTTGtcatggtatgaatgcaattTTGTTCGCCTTTTCAACAGTTGGTGCTGGTGAGGAGAGCATACTGTACAGGAAATCTGGAAAGCTTCCGttttcaataaatgtaattaaaatctg
>XR_006250931.1
ATGTCGTAAATCGGATATAAAAGGTGACGCTTTTTCCCTTCCGTCCTTCTCAGCTTCAACGCGTCTGCGAGTGTTAGTCAAGAAGGCTGGCTTAAACCTAGGATTTTGGGCATATCCATGTTGTTTGAAGTGCGTAGTCACCAACATGTGCGGAATGGTTTCGGGTGACATTAATGATCCTCCCGTGAACGAACTGGGCAATCGGGCTCCAGAACACAATGTGGGTGGATAATCCTGCGAGTTGATGCATAACCTGCCCCTGCAGTAGCTTGTTCTAATgGTGATGTGAAGGATGTCCACTAGAGGGCGCAACACCCTTTTGGTGTTTAGAAGTGTTGGAGGTCCCATATGACTAGACTGAAGAATGAATGCTGGCAGCTGATTGCTCTGACAGTACTGAGACGAAAAGGCATGTTCTTAAACGTTTCACAGTTGCATGTGTATGAAGTTGGTCATATACCAAGGCTTTTAGGATACCTGGTTCCTGACTTGCTGTGGACTTgaccaaaaattaaaatcctgATAACACCCTACAGTTTGCTGTTGGGTTTTATTAGGAACATTTTTCCTCTTATGCTCTTAATCTGAAAATGGGAGGTCTTACATGTTTAATTGTTTATGCAGTTACAGGTACGGTGTTGGAGTAAAGGCTTTCCCAGCCAGACTCTTCTTGGAAGTTGGTGCTGGTGAGGAGAGCATACTGTACAGGAAATCTGGAAAGCTTCCGttttcaataaatgtaattaaaatctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57040 False 470 lncRNA 0.48 8 22038380 22041219
TU57041 False 694 lncRNA 0.46 7 22038380 22041219
XR_006250930.1 True 973 lncRNA 0.43 6 22038360 22041263
XR_006250931.1 False 753 lncRNA 0.44 7 22038360 22041267

Neighbor

gene id symbol gene type direction distance location
castor2 gatsl2,LOC107685562,LOC107587690,LOC107595468,LOC107681899 coding downstream 2046 22020667 ~ 22036314 (-)
polr2j polr2j,LOC107587688,LOC107595521,LOC107681903 coding downstream 36745 21999494 ~ 22001615 (-)
alkbh4 alkbh4,LOC107712145,LOC107710716,LOC107681883 coding downstream 38948 21997636 ~ 21999412 (-)
lrwd1 LOC107712122,LOC107587741,LOC107681902,LOC107710709 coding downstream 40943 21989945 ~ 21997417 (-)
bckdk bckdk,LOC107685622,LOC107681895,LOC106603456 coding downstream 54141 21967987 ~ 21984219 (-)
doc2b doc2b,LOC107681901,LOC107685552,LOC106603746,LOC107587692 coding upstream 4032 22045299 ~ 22116025 (-)
LOC122345718 doc2b,LOC107587692,LOC107710708,LOC107689386,LOC107714896 coding upstream 96572 22137839 ~ 22211535 (-)
tmem248 tmem248,LOC107714897,LOC107572429,LOC107691774,LOC107689376,LOC107587695,LOC107710724 coding upstream 174072 22215339 ~ 22227188 (-)
lig3 lig3,LOC107691772,LOC107710722,LOC107689374 coding upstream 189613 22230880 ~ 22240821 (-)
tmem132e tmem132e,LOC107691770,LOC107689377,LOC107567383 coding upstream 265921 22307188 ~ 22555178 (-)
G38543 NA non-coding downstream 28253 22008886 ~ 22010107 (-)
G38523 NA non-coding downstream 161775 21867615 ~ 21876585 (-)
G38521 NA non-coding downstream 170899 21867128 ~ 21867461 (-)
LOC122345027 NA non-coding downstream 198260 21836313 ~ 21840100 (-)
G38515 LOC107712155,LOC107595525,LOC107685724 non-coding downstream 198687 21839359 ~ 21839673 (-)
G38634 NA non-coding upstream 750423 22791690 ~ 22793053 (-)
G38658 nup88,LOC107691763,LOC107709758,LOC107600765,LOC107744326,LOC107664301 non-coding upstream 832704 22873971 ~ 22876437 (-)
G38747 NA non-coding upstream 995190 23036457 ~ 23037470 (-)
G38767 NA non-coding upstream 1304322 23345589 ~ 23345797 (-)
G38769 NA non-coding upstream 1316307 23357574 ~ 23358147 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other downstream 154338 21877081 ~ 21884022 (-)
akap10 akap10,LOC107595480,LOC107587677 other downstream 212255 21809013 ~ 21826105 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other downstream 418777 21612688 ~ 21619583 (-)
G38359 NA other downstream 669312 21364238 ~ 21369048 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other downstream 1102263 20906043 ~ 20936097 (-)
nrgna nrgna other upstream 1085945 23127212 ~ 23132008 (-)
LOC122345364 NA other upstream 1560969 23602236 ~ 23605748 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other upstream 1710613 23751880 ~ 23756588 (-)
G38973 NA other upstream 1846036 23887303 ~ 23887680 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other upstream 1938397 23979664 ~ 23997739 (-)

Expression


Co-expression Network