nrgna (nrgna)


Basic Information

Item Value
gene id nrgna
gene name nrgna
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23127212 ~ 23132008 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU57383
GAGAGCGCGCTCAGAGACTCGGcacactgaaagagagagagagagacagcatcTTCACCGATATATTCACTTCAGTCATAGTTTTACTGGACAACAAATCTTAAACTTCACAAACCTGTCATCTCGAATCGCTATGGACTGTCGAAACGAAGGATGCACTCAGCCACAAGATGAGGACATCATGGACATTCCCCTCGATGACCCAGCTGCAAACAAGGCTGCTGCTAAAATTCAAGCTGGTTTTCGAGGTCACATGACCAGGAAGAAAATGAAGGACGACAAGCCTAGAGATGAGAAACAACGAGAGCAGAAGTAGCTAAGAGGACCACCGCCACCACCGCCAGATAGCACATCACTGCAATAACCAGagctcttttgtttaaaaagaaccCTTCAGTGTATGATATGAAAGCATCGACATTCAAACAACATGCAGAGTTTGCCACCTGACTAGCAGACTCTCTCACACTTTCCTCTTCTTCCTTTAGCATTTGAGTGGCTGTTTCTGACTCGAAACAGGTTCACAGCATGACATTATAAATTCGATTCATTTTAAGATAGAAGTTTGTTTGTGATCTGTCAGCTTTCAAATCTGAAGCGTTTTTTCTTGTTGCTTCAAGCAAGGCAAGCCAAATACTCTGTCTGGAGATTTGTTGATTTGTTTGAAGTTGTGCTTTACTTCTTTGGCTGTATTGAATCTTACAATATACAAGTATGCATTTACTAAAAGTCAGTGTTTTTTCTAGCATAAATTTTGTTTATGCCTGTTTAATAAAGCAAATTAAGTTCCTCATATAAGCTTTCTGTGTTCATTGGACCAGCTACTATTTAAATGTTGGTgttgattataataaatatgttcttTACTGCTTagatatattttcaattagtcAAAAAACGTGGTTTACGTGACAAATATATGCAAGCTGTGCAATAAACAGAGAATATTGTTCGTATTtccagacagtgtgtgtgtcagatccATGTGATTCAGTGAAGTATTCCCATAGCTTAATCAATCTTTCAAACACAGAGACTGTATCCTTCAAATAGCACAGATGCTCATTAAAAATggatttgctc
>XM_043240775.1
GCAGACAGCGAGAGCGCGCTCAGAGACTCGGcacactgaaagagagagagagagacagcatcTTCACCGATATATTCACTTCAGTCATAGTTTTACTGGACAACAAATCTTAAACTTCACAAACCTGTCATCTCGAATCGCTATGGACTGTCGAAACGAAGGATGCACTCAGCCACAAGATGAGGACATCATGGACATTCCCCTCGATGACCCAGCTGCAAACAAGGCTGCTGCTAAAATTCAAGCTGGTTTTCGAGGTCACATGACCAGGAAGAAAATGAAGGACGACAAGCCTAGAGATGAGAAACAACGAGAGCAGAAGTAGCTAAGAGGACCACCGCCACCACCGCCAGATAGCACATCACTGCAATAACCAGagctcttttgtttaaaaagaaccCTTCAGTGTATGATATGAAAGCATCGACATTCAAACAACATGCAGAGTTTGCCACCTGACTAGCAGACTCTCTCACACTTTCCTCTTCTTCCTTTAGCATTTGAGTGGCTGTTTCTGACTCGAAACAGGTTCACAGCATGACATTATAAATTCGATTCATTTTAAGATAGAAGTTTGTTTGTGATCTGTCAGCTTTCAAATCTGAAGCGTTTTTTCTTGTTGCTTCAAGCAAGGCAAGCCAAATACTCTGTCTGGAGATTTGTTGATTTGTTTGAAGTTGTGCTTTACTTCTTTGGCTGTATTGAATCTTACAATATACAAGTATGCATTTACTAAAAGTCAGTGTTTTTTCTAGCATAAATTTTGTTTATGCCTGTTTAATAAAGCAAATTAAGTTCCTCATATAAGCTTTCTGTGTTCATTGGACCAGCTACTATTTAAATGTTGGTgttgattataataaatatgttcttTACTGCTTagatatattttcaattagtcAAAAAACGTGGTTTACGTGACAAATATATGCAAGCTGTGCAATAAACAGAGAATATTGTTCGTATTtccagacagtgtgtgtgtcagatccATGTGATTCAGTGAAGTATTCCCATAGCTTAATCAATCTTTCAAACACAGAGACTGTATCCTTCAAATAGCACAGATGCTCATTAAAAATggatttgctcaaatgca

Function

symbol description
nrgna Predicted to enable calmodulin binding activity. Is expressed in forebrain and hindbrain. Orthologous to human NRGN (neurogranin).

NR:

description
neurogranin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57383 False 1083 lncRNA 0.39 3 23127219 23131999
XM_043240775.1 True 1099 mRNA 0.39 3 23127212 23132008

Neighbor

gene id symbol gene type direction distance location
hepacamb LOC107712936,LOC107556427,LOC107744315,LOC107691804,LOC107664307,LOC107600797 coding downstream 8068 23105929 ~ 23119144 (-)
ccdc15 ccdc15,LOC107691749,LOC107712940,LOC107556428,LOC107744316 coding downstream 22237 23098840 ~ 23104975 (-)
slc37a2 slc37a2,LOC107691751 coding downstream 29953 23086295 ~ 23097259 (-)
pde9ab LOC107664292,LOC107556423,LOC107600796,LOC107712935,LOC108427349,LOC108259736,LOC571737 coding downstream 42287 23078556 ~ 23084925 (-)
oafb LOC107691805,LOC107744339,LOC107556424,LOC107664291 coding downstream 50818 23070110 ~ 23076394 (-)
LOC122345314 fer,LOC107709787,LOC107691727,LOC107721649,LOC107663784,LOC107564044,LOC107603170 coding upstream 262156 23394164 ~ 23411152 (-)
btg4 btg4,LOC107745130,LOC107691802,LOC107600778,LOC107709986 coding upstream 314689 23446697 ~ 23448138 (-)
ppp2r1ba ppp2r1a,LOC107663771,LOC107691746,LOC107745127,LOC107603174,LOC108428700,LOC103032850 coding upstream 363130 23495138 ~ 23505743 (-)
alg9 alg9,LOC107691744,LOC107745128 coding upstream 378170 23510178 ~ 23518148 (-)
fdxacb1 fdxacb1,si:dkey-71l1.3,LOC107745124,LOC107574693 coding upstream 387252 23519260 ~ 23523750 (-)
G38747 NA non-coding downstream 89742 23036457 ~ 23037470 (-)
G38658 nup88,LOC107691763,LOC107709758,LOC107600765,LOC107744326,LOC107664301 non-coding downstream 250775 22873971 ~ 22876437 (-)
G38634 NA non-coding downstream 334159 22791690 ~ 22793053 (-)
LOC122344815 NA non-coding downstream 1085945 22038360 ~ 22041267 (-)
LOC122346224 NA non-coding downstream 1087178 22039901 ~ 22040034 (-)
G38767 NA non-coding upstream 213581 23345589 ~ 23345797 (-)
G38769 NA non-coding upstream 225566 23357574 ~ 23358147 (-)
G38892 NA non-coding upstream 534833 23666841 ~ 23669869 (-)
G38982 NA non-coding upstream 770611 23902619 ~ 23902898 (-)
G39034 NA non-coding upstream 845168 23977176 ~ 23978527 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other downstream 1243190 21877081 ~ 21884022 (-)
akap10 akap10,LOC107595480,LOC107587677 other downstream 1301107 21809013 ~ 21826105 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other downstream 1507629 21612688 ~ 21619583 (-)
G38359 NA other downstream 1758164 21364238 ~ 21369048 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other downstream 2191115 20906043 ~ 20936097 (-)
LOC122345364 NA other upstream 470228 23602236 ~ 23605748 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other upstream 619872 23751880 ~ 23756588 (-)
G38973 NA other upstream 755295 23887303 ~ 23887680 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other upstream 847656 23979664 ~ 23997739 (-)
G39113 NA other upstream 1065697 24197705 ~ 24200496 (-)

Expression


Co-expression Network