G38892


Basic Information

Item Value
gene id G38892
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23666841 ~ 23669869 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU57600
CCATCAGAGAGGTGTTATGAGCAAACAGACGGgtgaaagaaaacaaggaaTCATTCTACTTTTCAGATTTCCTCTTTCAGTTGGCAGGGGCGAAAATTAAACGTCCAGTGTTGTTTctctacttttttttccttttttttttttttttcttgctcgtGAATTCAAGAGTTGATCGTTTCCCGAAACGGCAATTTTCCTGCCGTCTCGTACAAgaagatcattttaaagcataaaaaggCCGAAAGTGCAATCAATACATTGTTtccatcacaaaataaataatccagCACAGGGAGGGAGGAATCTGTACGACACTGAGAAACTTTGTACTTTGGAAATGAACGTGAGTTCTGAACGTTTTATTAGAGTGCTCGCTGCTcgaacaaaaagaacaaaacccTTGTTCTGACGGAAGTTTACTTGAACGCTCGGTGCAGGTCAGACATGGGGAGGggggacaaaaataaaataaaataaatcgaaTGTCTCGGAGTAACACAAATTTCAATATAATGTGAGACAATACTGGCGTTTGCTTTAATACACTGACAGAAGGAATTATAGTGAATGgtacaaaaaagcaaaatagaataaaatgctagaataatattacagtttttcaaacAACACACTATAGGGATAATTGCTttgatgtaaaaacaaacagaagagcTCACTCACCAGTAGTTTAATTGATGTAAGCTCAGCTTCaccaaaagaataaaaataatatttttgatctGAACCCACCGGCCAATCGTGCAAGAGCACACATCCTAACTGTATTAGACAGCAGCCTCGAGTGGAAATGATCACCGCTTCTGAACGATTGGCAAAGTTAGAGCAACGACGTGAAGaggggaggggaaaaaaaaggtttgcgGACTAGAAAGAAGCACATTCAATGCTATGGGACCCTTACATATTCCAAATGTGCAAATATTAGAGCAGTATTGTTTCTGGGTCTTCATCGCTACTATTACAGAGGAAAGAGTTGAGGAGTATTCCTGACAGACATCCACATTCTAACATCATTAGTTTcgcagtgaaaaaaaaacaaaaaaacatcacattactGAAtctacaaaaaagtatttacaaaatacaaaaggaaTGCTTTGATAGAGTAAACCTTGAAGAAACCACTATTCCATGTTTGTGGAAATGGAACCAGATTTATGTGACTCGGGAACAGATGGGAACGGGAGCACGGTGGCACTTGAAAAAAATGGTAGGAAACCACCTGGGATATTCTTAATACAAAGCATTGTCTAATACTTCTGATGATCGAGAAAACCTGATTGTGAAACAGCACAGACAGCACAGGAATAAGTGCGGCGCAATCCAAGACAATGGCACAGATACAAATAAACATGCTTGTGACTGGCTTTGGTCGCTGGTTACagaggaaaacaaagaaagagagagaaagagatccCCGAAGTAGACACACAACGGTCCGTTTCGGACTGAGCTTTTGGTGATGTCTAATACGCTACATGGcaacattgtaaatgtaaagaGATTACAGTTCTGTCGAAAAGAGTGTGGTTTTCGTcgctattttgtgttttttgaaggcaggctgctcttttccatacaacgaAAGTACCAGAAAAGCTGTGTATTTGAAagttattcactgaaaatcttcCGCGCGCATCACGAATGGGTTTTTGGGCATCGTATCTAAACGTGTGCAAAGCATACCACGAAAGTCGTATAGACCACATCTATAATATTCTCTGGTGCTTTTCGAAGCCCTAGGTCCTTAATTTTCTCTCAgggtatggaaaagagcagcgtgaacGCAGTACGTTTCTGCTTTTGTTTCCTATAGAAGAAACCGAAGCGATCAGAAAGGCAAATGATGAGAGTTGACGTTTTTCTGAACCGTCGCTTTAAACATCAGGTGTGAGGTTGAAGTATCTGGAGACTTCTGAAGGCTTGTAAACTGTAGACTGATGCAGAAGCGCTGGCTTTCACGTCAAGGCCACCTGACTGTAGTATACTAGCTGTGTTGTTAGAAATTGCACTTGGGTAAAAATCGATGCATTTGGTCTCATTGCTTGATTGAGTGCTGAAACACTGGAGTGTCTCTCCATGAAAGCTGGTTTACGTGAATGACATACatttgtattactattattattggttTTTTTCACTTATTACTCCaagtaacataaaaatgacataaaatggcTTGACTAAAAAACTCCCCAAACCATTAGGTttgacttaaaagaaaaaaaaaaacaatatcgaGTGGACAAACAGTCCATCTTCACACATTCATCTCCATGTGGTTAAAGGGGCAGCTTCCCAAAAAAAcgaacattctgtcatttatttacgTCTTTCCAAACCATCGTGACGTTCTTTCCTCTGCAGAAGGCaatcataaattaaaatgtgccgAGTATGAAGCGCTGAACCCGGATAACCCCTCGCTGGCTGGACCgaaaacaaatgcttttgtgttccgcaaaagaaagaaaagttctGCGGGGTTTGAAACGGCTTAATGACGACAGGatttcatttctgagtgaacgACCCCCTCTTTTTCACTGATTAGGGATCACCTGGATGCGTAGAAAGAGTTTGGCCTTCCGGCCATTTCCTCATTAAGGGCTATTTTTTCTTGACGGAGGCCAGTTCTTTTTGAACGTCGACAAATTTAGGACGATTCTCAGGCTTGTACTCCCAACATCTCTGCATGATCCTGTACACCTCATCTGGACACTTCTGCGGGCAGGACATCCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57600 True 2768 lncRNA 0.40 2 23666841 23669869

Neighbor

gene id symbol gene type direction distance location
atp6v1g1 atp6v1g1,LOC107709788,LOC107566902,LOC108259956 coding downstream 30673 23633681 ~ 23636168 (-)
slc31a1 slc31a1 coding downstream 34150 23623500 ~ 23632691 (-)
prpf4 prpf4,LOC107721635,LOC107691731,LOC107743802,LOC107663789 coding downstream 45681 23616176 ~ 23621160 (-)
cryabb cryab,LOC107574702,LOC107603201,LOC107663778,LOC107691740,LOC107721632 coding downstream 104090 23559354 ~ 23562751 (-)
bicdl2 zgc:153929,LOC107574699,LOC107743809,LOC107691738,LOC107663774,LOC107603196 coding downstream 112354 23548715 ~ 23554487 (-)
pja2 LOC107691728,LOC107721647,LOC107709785,LOC107663782,LOC107603188,LOC107564050 coding upstream 1418 23671287 ~ 23684780 (-)
tmem232 LOC107691726,LOC107751260 coding upstream 63874 23733743 ~ 23740396 (-)
lhx1b lhx1b,lhx1,LOC107728209,LOC107691793,LOC107600607,LOC107695154,LOC107730325,LOC107603180 coding upstream 321422 23991291 ~ 23996276 (-)
mrm1 mrm1,LOC107695155,LOC107603181,LOC107730354 coding upstream 369837 24039706 ~ 24042737 (-)
fzd9a LOC107600608,LOC107728207,LOC107691792,LOC107695150,LOC107572577,LOC107730317 coding upstream 400410 24070279 ~ 24072863 (-)
G38769 NA non-coding downstream 308694 23357574 ~ 23358147 (-)
G38767 NA non-coding downstream 321044 23345589 ~ 23345797 (-)
G38747 NA non-coding downstream 629371 23036457 ~ 23037470 (-)
G38658 nup88,LOC107691763,LOC107709758,LOC107600765,LOC107744326,LOC107664301 non-coding downstream 790404 22873971 ~ 22876437 (-)
G38634 NA non-coding downstream 873788 22791690 ~ 22793053 (-)
G38982 NA non-coding upstream 232750 23902619 ~ 23902898 (-)
G39034 NA non-coding upstream 307307 23977176 ~ 23978527 (-)
G39050 NA non-coding upstream 398761 24068630 ~ 24069914 (-)
G39057 NA non-coding upstream 418011 24087880 ~ 24088812 (-)
G39059 NA non-coding upstream 431972 24101841 ~ 24107263 (-)
LOC122345364 NA other downstream 61093 23602236 ~ 23605748 (-)
nrgna nrgna other downstream 534833 23127212 ~ 23132008 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other downstream 1782819 21877081 ~ 21884022 (-)
akap10 akap10,LOC107595480,LOC107587677 other downstream 1840736 21809013 ~ 21826105 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other downstream 2047258 21612688 ~ 21619583 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other upstream 82011 23751880 ~ 23756588 (-)
G38973 NA other upstream 217434 23887303 ~ 23887680 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other upstream 309795 23979664 ~ 23997739 (-)
G39113 NA other upstream 527836 24197705 ~ 24200496 (-)
tmc2a tmc2a,tmc1,LOC107684381,LOC107596032,LOC108437175,LOC107730318,LOC108259782 other upstream 595595 24265464 ~ 24277304 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G251941 NA non-coding CI01000059 null 2008538 ~ 2010679 (+)