G39274


Basic Information

Item Value
gene id G39274
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24414900 ~ 24490792 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU58148
ttctaaaacatcattttatttaactttaaaaaaaaaaaaagaaaagccaaTACAGATCTGAAGCATTTTTAGAACTGGAACACACTTGTTAATCTCAATTTCAGTATTCTGGTAACAGTATCTGTAAACCAATGCTATACAATTTCGAAAAAAGAGGGGAAGAACAAAAACTGGATTCACAAAATACAAGAAATTCTGAGAACAGGGGCTGCAGAAAGAAGACTACCACGGTAATGTGAAACACGGAAGTTTGTGGCGAGAGGTGAAAAGAGTACAATGCAGAAGGtgagacaaaagaaagaaagaaagaaagaaaaagcccCAGATAAATTACCGTGAAAGTTTGGTTTCTTTCATTGTAATTAAGTATAGGTTTAGAGTGAAATTTGCAgagaatcaattaaaaaaaaagaatctcaGAATTAGAACGTGTAAGCTTCCTTAATTCTCAGACTTTCAGAATCACAAACAGTAAAAGTTTGAAACGAATCGGCCTGTGAAGTTCAAATATTTACTTCAAACCACGTGCTAGTTAACTCTGTATAAGGGGACTCAGAGAAAGTCCGTCCTATCCTTGAAGAAACGCGGCCAAACCATGAGTGTAGGACAATTGTGCGTATAGACGTGGTTGAAAAACGCTAGAGATACCATTCCTCTTGAAAATCTTACATCGAAGACCTTCAAATGCTTACAAAACAATGGTGAAATTCAGCAGTACtctccacttaaaaaaaatacataactgACTTATTTTAAGGCAATCAGGCCTAGTTAAACAAGGagtcaaataaattcaaaatataggAACAGAGTTGACCAACAAAAGCGACgtgaaaaataacatgaattAATGGTGTCACGTTtacgcgttttttttttatgtggaacATCAAATGCAAATTTGCATTCGTCAATGCAGATGAGAGGGGAAGGCGAAAACTATACTGATGTCAGCGATGATAAAATCAGAAATACTGAAGCGAGCTTTGAATGTTAATCTGGTAGGTTCCCCTAACTTTGTCGCATCCAAGTGATAAACTTTTAGAGAATGTGGTCGCAAAGTTGATCCATCCATGTAAACACTATTAAGGATTTTCTGATACAGAAAAAATACTATGTTGACAAGGAACGAGAGGGAGTTATGTCAtcgaaatgaatgttttttttgttttccatcatTCCAGAGGATCAAATCAATACGCTCTCGATTATGGGTAAGATATCAAAAAATAAACCTCTATATTGGATTAGGAACCTGCGGTATTCTGCTGTTGTGACAATCATTCAGTTGCAGTTATTTCAAACGTCATGGTTTATTCGTTTATGTCTGCTCTAGTGAAAATGTTCAGATATATCACCATTACTGTAGACAGAAGCAGCACTAATGTCCTCCAGGCTCTGCCCAAAGAGAAAATTAGCTCCAAGTGAAAAAGACTAATAAAATACTCTCTCTTTAATTTTTACCAGCGGCTGATaaagaaatatgtaataaaGTACTTTTTCCACACTTCTTCTGTAAAACTGAAGCCACCACTCTTGGCGCTTTGACACTTAAAATATCCTCTtagatacattaaaaaaagactttaagcaataaaaacaagtttataTTATGGGTAgcaacatgtaaaataaaatcacaactCTGCAGAGAAGATGGAAAATACAGAATTTGCATAGCAGATTAGAATACAACTGAGAAGGAACTGCGTTTTTGGTACAATATGGTTTTGTCACATAGCTTTTGATGCTATCTGTATGTACAGCTTGACGTCCGTTTCGGTTCCTTTCTTGCTAGTCCATAAAGCAGAAATGGATTTAGAGTCTGTCACTATAATGCTCACAAAAGAAATGCCAAGCATCTTGTTTGCTTCTCGTCACGCTGCTCCTTTCAGGCGAGACATGTCATATCAATGTTTGTGTAGGAGTCTCTTACAGGAAAACAAGTAGATACTGTTTCGAAAGTGCCATCTTGCTACATTTGATCAGCTGATTCCATGGTCTGTTCGTGAAAATTAAACATCATGTTGAACATCCCGATAGCTTTCAGATACTGTGAGTTTTGGTCACATTCTCTCgtacacacgtacacacacacgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtacacacgtacacacgtaacacaaacacaaatgggAACCTGCACCAAGCAGGCAGGGGGGTAGAGGAGGTAAAAAAGATGCACTCTAGAGGTTTAATCAATGTTCCACATTCCAGCAGCGGGTAAAGCTTTGAAATGAACAAGCACCATTTGGAAAAGGCCTCCGAAGTCCTCCATTTTGGGAGAGAGAGTTACATTTTTAGCAGTTTCCGCTCGATAAAGAAAACTACATTCAGACTGGCAAAAGTCTCAGTGGCTGAAATGTTCGTTTTGGATTTTGCTTTCTTGGCTTTCCGACATGGTCGTTTCAAGGCAAAAGGCAGCCCTCGGTAGCAGCCTTTCTGGAGGTATCTCCATTCCAGGGGAGGCCCTTTCTCAACTCCCGTGTTTGTAACGAGTCCCAAGGGTGTGTTCATGAGTCCTCACCGCCTCTGGTGTGCGTAGACTGGGTATGCTAACGTGACATTCAAAGAGTCATTGTGCTGAACCAGGGAAGTATGCTGGTAGTGCAAGACCAGTTCTTTCAGAGAGCTGTAAAGATTGTAGGGCTCAGCAAAGCCATATCCCGTGGGTGTCTTGTTGATGACGCAGTGCTTGACCTCACCATCCACACTACACATCAGAC
>TU58150
ttctaaaacatcattttatttaactttaaaaaaaaaaaaagaaaagccaaTACAGATCTGAAGCATTTTTAGAACTGGAACACACTTGTTAATCTCAATTTCAGTATTCTGGTAACAGTATCTGTAAACCAATGCTATACAATTTCGAAAAAAGAGGGGAAGAACAAAAACTGGATTCACAAAATACAAGAAATTCTGAGAACAGGGGCTGCAGAAAGAAGACTACCACGGTAATGTGAAACACGGAAGTTTGTGGCGAGAGGTGAAAAGAGTACAATGCAGAAGGtgagacaaaagaaagaaagaaagaaagaaaaagcccCAGATAAATTACCGTGAAAGTTTGGTTTCTTTCATTGTAATTAAGTATAGGTTTAGAGTGAAATTTGCAgagaatcaattaaaaaaaaagaatctcaGAATTAGAACGTGTAAGCTTCCTTAATTCTCAGACTTTCAGAATCACAAACAGTAAAAGTTTGAAACGAATCGGCCTGTGAAGTTCAAATATTTACTTCAAACCACGTGCTAGTTAACTCTGTATAAGGGGACTCAGAGAAAGTCCGTCCTATCCTTGAAGAAACGCGGCCAAACCATGAGTGTAGGACAATTGTGCGTATAGACGTGGTTGAAAAACGCTAGAGATACCATTCCTCTTGAAAATCTTACATCGAAGACCTTCAAATGCTTACAAAACAATGGTGAAATTCAGCAGTACtctccacttaaaaaaaatacataactgACTTATTTTAAGGCAATCAGGCCTAGTTAAACAAGGagtcaaataaattcaaaatataggAACAGAGTTGACCAACAAAAGCGACgtgaaaaataacatgaattAATGGTGTCACGTTtacgcgttttttttttatgtggaacATCAAATGCAAATTTGCATTCGTCAATGCAGATGAGAGGGGAAGGCGAAAACTATACTGATGTCAGCGATGATAAAATCAGAAATACTGAAGCGAGCTTTGAATGTTAATCTGGTAGGTTCCCCTAACTTTGTCGCATCCAAGTGATAAACTTTTAGAGAATGTGGTCGCAAAGTTGATCCATCCATGTAAACACTATTAAGGATTTTCTGATACAGAAAAAATACTATGTTGACAAGGAACGAGAGGGAGTTATGTCAtcgaaatgaatgttttttttgttttccatcatTCCAGAGGATCAAATCAATACGCTCTCGATTATGGGTAAGATATCAAAAAATAAACCTCTATATTGGATTAGGAACCTGCGGTATTCTGCTGTTGTGACAATCATTCAGTTGCAGTTATTTCAAACGTCATGGTTTATTCGTTTATGTCTGCTCTAGTGAAAATGTTCAGATATATCACCATTACTGTAGACAGAAGCAGCACTAATGTCCTCCAGGCTCTGCCCAAAGAGAAAATTAGCTCCAAGTGAAAAAGACTAATAAAATACTCTCTCTTTAATTTTTACCAGCGGCTGATaaagaaatatgtaataaaGTACTTTTTCCACACTTCTTCTGTAAAACTGAAGCCACCACTCTTGGCGCTTTGACACTTAAAATATCCTCTtagatacattaaaaaaagactttaagcaataaaaacaagtttataTTATGGGTAgcaacatgtaaaataaaatcacaactCTGCAGAGAAGATGGAAAATACAGAATTTGCATAGCAGATTAGAATACAACTGAGAAGGAACTGCGTTTTTGGTACAATATGGTTTTGTCACATAGCTTTTGATGCTATCTGTATGTACAGCTTGACGTCCGTTTCGGTTCCTTTCTTGCTAGTCCATAAAGCAGAAATGGATTTAGAGTCTGTCACTATAATGCTCACAAAAGAAATGCCAAGCATCTTGTTTGCTTCTCGTCACGCTGCTCCTTTCAGGCGAGACATGTCATATCAATGTTTGTGTAGGAGTCTCTTACAGGAAAACAAGTAGATACTGTTTCGAAAGTGCCATCTTGCTACATTTGATCAGCTGATTCCATGGTCTGTTCGTGAAAATTAAACATCATGTTGAACATCCCGATAGCTTTCAGATACTGTGAGTTTTGGTCACATTCTCTCgtacacacgtacacacacacgtacacacacacacacacacacgtacacacgtaacacaaacacaaatgggAACCTGCACCAAGCAGGCAGGGGGGTAGAGGAGGTAAAAAAGATGCACTCTAGAGGTTTAATCAATGTTCCACATTCCAGCAGCGGGTAAAGCTTTGAAATGAACAAGCACCATTTGGAAAAGGCCTCCGAAGTCCTCCATTTTGGGAGAGAGAGTTACATTTTTAGCAGTTTCCGCTCGATAAAGAAAACTACATTCAGACTGGCAAAAGTCTCAGTGGCTGAAATGTTCGTTTTGGATTTTGCTTTCTTGGCTTTCCGACATGGTCGTTTCAAGGCAAAAGGCAGCCCTCGGTAGCAGCCTTTCTGGAGGTATCTCCATTCCAGGGGAGGCCCTTTCTCAACTCCCGTGTTTGTAACGAGTCCCAAGGGTGTGTTCATGAGTCCTCACCGCCTCTGGTGTGCGTAGACTGGGTATGCTAACGTGACATTCAAAGAGTCATTGTGCTGAACCAGGGAAGTATGCTGGTAGTGCAAGACCAGTTCTTTCAGAGAGCTGTAAAGATTGTAGGGCTCAGCAAAGCCATATCCCGTGGGTGTCTTGTTGATGACGCAGTGCTTGACCTCACCATCCACACTACACATCAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58148 True 2821 lncRNA 0.39 2 24414900 24490792
TU58150 False 2737 lncRNA 0.39 3 24414900 24490792

Neighbor

gene id symbol gene type direction distance location
cd180 LOC107742410,LOC107681052,LOC107600612 coding downstream 5387 24406995 ~ 24409513 (-)
LOC122345313 LOC107681049,LOC107706956,LOC107574963 coding downstream 97069 24298530 ~ 24317831 (-)
LOC122345102 LOC107691787,LOC107600611,LOC107684345,LOC107595997,LOC107684346 coding downstream 150182 24253333 ~ 24264718 (-)
pcsk5a pcsk5a,LOC107728213,LOC107691788,LOC107684380,LOC107730328,LOC107596014,LOC107600598 coding downstream 162269 24230346 ~ 24252631 (-)
ntrk2b ntrk2b,LOC107691713,LOC107728215,LOC107600581,LOC107730333,LOC107596017,LOC108443857,LOC103044160,LOC108259739,LOC107684341 coding downstream 227415 24166208 ~ 24187485 (-)
pmchl LOC107683707,LOC107575048,LOC107738923,LOC107596031,LOC107730319,LOC107684382 coding upstream 39616 24530408 ~ 24530963 (-)
npr2 npr2,LOC107559735,LOC107746469,LOC107730344,LOC107684353,LOC107595992,LOC107683705,LOC108260050 coding upstream 55356 24546148 ~ 24585135 (-)
tprn tprn,LOC107559738,LOC107746472,LOC107684357,LOC107595990,LOC107730352,LOC107697983,LOC107734963 coding upstream 106295 24597087 ~ 24613743 (-)
tmem203 tmem203,LOC107559731,LOC107697982,LOC107684383,LOC107730349,LOC107580151 coding upstream 124566 24615358 ~ 24616916 (-)
traf2b traf2,LOC107697985,LOC107746475,LOC107567702 coding upstream 142510 24633302 ~ 24652541 (-)
G39137 NA non-coding downstream 134011 24277474 ~ 24280889 (-)
G39123 NA non-coding downstream 195373 24218993 ~ 24219527 (-)
G39122 NA non-coding downstream 196470 24218100 ~ 24218430 (-)
G39121 NA non-coding downstream 199740 24214526 ~ 24215160 (-)
G39120 NA non-coding downstream 202141 24212442 ~ 24212759 (-)
G39296 NA non-coding upstream 28875 24519667 ~ 24520387 (-)
G39298 LOC107683704,LOC107738921,LOC107600589,LOC107595993,LOC107730350 non-coding upstream 30770 24521562 ~ 24522021 (-)
LOC122345299 NA non-coding upstream 132767 24623559 ~ 24624878 (-)
G39337 NA non-coding upstream 239420 24730212 ~ 24730391 (-)
G39341 NA non-coding upstream 240847 24731639 ~ 24732075 (-)
tmc2a tmc2a,tmc1,LOC107684381,LOC107596032,LOC108437175,LOC107730318,LOC108259782 other downstream 137596 24265464 ~ 24277304 (-)
G39113 NA other downstream 214404 24197705 ~ 24200496 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other downstream 417161 23979664 ~ 23997739 (-)
G38973 NA other downstream 527220 23887303 ~ 23887680 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other downstream 658312 23751880 ~ 23756588 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107746468,LOC107683706,LOC107595991,LOC107684355 other upstream 96932 24587724 ~ 24594116 (-)
naa38 naa38 other upstream 255880 24746672 ~ 24748610 (-)
LOC122345923 NA other upstream 263410 24754202 ~ 24758668 (-)
G39413 LOC102215562 other upstream 791094 25281886 ~ 25282286 (-)
LOC122344921 NA other upstream 1071182 25561974 ~ 25568686 (-)

Expression


Co-expression Network