G39285 (LOC107738919,LOC107681053,LOC107600587,LOC107595995)


Basic Information

Item Value
gene id G39285
gene name LOC107738919,LOC107681053,LOC107600587,LOC107595995
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24470611 ~ 24479055 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU58164
TCCTCTCGATGGCCTCAAGGAGCTTGAGCAGCATGGGCGGTGCTACCTCTGGAGGTGCGAACTGCTCCGTCAGGTCTACCAGAGAGCTGAAGCTTGCTCAGAGTCCGAGTCTGGCCTTGCAGGCCCTGGGGCCACAGGTAGAGGCCTTGGGGGTCTTGGTTTGGGAGTTGGTGGAGATATCTTTTTCTTGCCGATGAACTCCACATACGTACCAGGAAAGTCCCCCTTTTCCTGAGTGGTTTCATTAAAGCCAGGCAGCCATCCGATTTCATCCGGTCTCTCTTCCATCCCCTCAGTGTAACCAACGGCGAGTAGTGCACCTTTATTGACCGTAAGAATGTCCCCTACATGCAGGTCAATAtcctcctccctctctttcttatAGTCATACAGCGCTCTATACTGATAACCTTCTGCACTCATTTTGATGGTGTCGTCTCCAACTCCTGATGATCGACAAAAATGATGATCGCTCACAAAGGTTCTTCGAACCAATATTTGGATGATACAAGAGTcgaaaagtttttttgtttttctccctaAGACTTTAAGCCTTCATTAACATCATCCACTTCCTAGTCTCTAAGGATGAGTGGATTATGTAAAACTAATAGTCCAATGATTGGGTGCACCTTCAAGGTGCTTTATACACACTCTTCCCATCTGTGTGAGGCCTTATCCTGTGAATCTCACAGAGTAACTAGAAC

Function

NR:

description
PREDICTED: phosphatidylinositol 3-kinase regulatory subunit alpha-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58164 True 707 lncRNA 0.47 2 24470611 24479055

Neighbor

gene id symbol gene type direction distance location
cd180 LOC107742410,LOC107681052,LOC107600612 coding downstream 61098 24406995 ~ 24409513 (-)
LOC122345313 LOC107681049,LOC107706956,LOC107574963 coding downstream 152780 24298530 ~ 24317831 (-)
LOC122345102 LOC107691787,LOC107600611,LOC107684345,LOC107595997,LOC107684346 coding downstream 205893 24253333 ~ 24264718 (-)
pcsk5a pcsk5a,LOC107728213,LOC107691788,LOC107684380,LOC107730328,LOC107596014,LOC107600598 coding downstream 217980 24230346 ~ 24252631 (-)
ntrk2b ntrk2b,LOC107691713,LOC107728215,LOC107600581,LOC107730333,LOC107596017,LOC108443857,LOC103044160,LOC108259739,LOC107684341 coding downstream 283126 24166208 ~ 24187485 (-)
pmchl LOC107683707,LOC107575048,LOC107738923,LOC107596031,LOC107730319,LOC107684382 coding upstream 51353 24530408 ~ 24530963 (-)
npr2 npr2,LOC107559735,LOC107746469,LOC107730344,LOC107684353,LOC107595992,LOC107683705,LOC108260050 coding upstream 67093 24546148 ~ 24585135 (-)
tprn tprn,LOC107559738,LOC107746472,LOC107684357,LOC107595990,LOC107730352,LOC107697983,LOC107734963 coding upstream 118032 24597087 ~ 24613743 (-)
tmem203 tmem203,LOC107559731,LOC107697982,LOC107684383,LOC107730349,LOC107580151 coding upstream 136303 24615358 ~ 24616916 (-)
traf2b traf2,LOC107697985,LOC107746475,LOC107567702 coding upstream 154247 24633302 ~ 24652541 (-)
G39137 NA non-coding downstream 189722 24277474 ~ 24280889 (-)
G39123 NA non-coding downstream 251084 24218993 ~ 24219527 (-)
G39122 NA non-coding downstream 252181 24218100 ~ 24218430 (-)
G39121 NA non-coding downstream 255451 24214526 ~ 24215160 (-)
G39120 NA non-coding downstream 257852 24212442 ~ 24212759 (-)
G39296 NA non-coding upstream 40612 24519667 ~ 24520387 (-)
G39298 LOC107683704,LOC107738921,LOC107600589,LOC107595993,LOC107730350 non-coding upstream 42507 24521562 ~ 24522021 (-)
LOC122345299 NA non-coding upstream 144504 24623559 ~ 24624878 (-)
G39337 NA non-coding upstream 251157 24730212 ~ 24730391 (-)
G39341 NA non-coding upstream 252584 24731639 ~ 24732075 (-)
tmc2a tmc2a,tmc1,LOC107684381,LOC107596032,LOC108437175,LOC107730318,LOC108259782 other downstream 193307 24265464 ~ 24277304 (-)
G39113 NA other downstream 270115 24197705 ~ 24200496 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other downstream 472872 23979664 ~ 23997739 (-)
G38973 NA other downstream 582931 23887303 ~ 23887680 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other downstream 714023 23751880 ~ 23756588 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107746468,LOC107683706,LOC107595991,LOC107684355 other upstream 108669 24587724 ~ 24594116 (-)
naa38 naa38 other upstream 267617 24746672 ~ 24748610 (-)
LOC122345923 NA other upstream 275147 24754202 ~ 24758668 (-)
G39413 LOC102215562 other upstream 802831 25281886 ~ 25282286 (-)
LOC122344921 NA other upstream 1082919 25561974 ~ 25568686 (-)

Expression


Co-expression Network