G39503


Basic Information

Item Value
gene id G39503
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 25557296 ~ 25557522 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU58424
tggagggtgttttggtaccatTCTTTATGGCTGCGTTTTTGGGCAAAactgtgagtgagcccactcccttggatgagaagaaACCCCACACATGAATGGTCttaggatgctttactgttggcatgagacaggactgatggtagcgctcaccttttcttctccggacaagcctttttctagatgccccaaacaatcggaaaggggcttcatcggacaatatgactttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58424 True 227 lncRNA 0.48 1 25557296 25557522

Neighbor

gene id symbol gene type direction distance location
LOC122345798 dcx coding downstream 33459 25470652 ~ 25523837 (-)
LOC122345796 pak3,LOC107566210,LOC107712492,LOC103475835,LOC103141826,LOC108245238,LOC107093501 coding downstream 110634 25303475 ~ 25446662 (-)
zfpl1 zfpl1 coding downstream 294168 25231235 ~ 25263128 (-)
LOC122346005 LOC107727699,LOC107595976,LOC107660332 coding downstream 654007 24814609 ~ 24903289 (-)
taf6 taf6,LOC103372846 coding downstream 774648 24759478 ~ 24782648 (-)
hip1rb hip1r,hip1rb,LOC107571022 coding upstream 60589 25618111 ~ 25651008 (-)
kntc1 kntc1 coding upstream 97985 25655507 ~ 25708679 (-)
trnal-cag_26 NA coding upstream 320149 25877671 ~ 25877755 (-)
trnal-cag_27 NA coding upstream 329836 25887358 ~ 25887441 (-)
trnal-aag_30 NA coding upstream 330992 25888514 ~ 25888596 (-)
G39490 NA non-coding downstream 28185 25528883 ~ 25529111 (-)
G39470 NA non-coding downstream 103462 25453512 ~ 25453834 (-)
G39458 NA non-coding downstream 257380 25299523 ~ 25299916 (-)
G39456 NA non-coding downstream 258067 25297876 ~ 25299229 (-)
G39401 NA non-coding downstream 380947 25175308 ~ 25176349 (-)
G39506 NA non-coding upstream 1353 25558875 ~ 25559218 (-)
G39514 NA non-coding upstream 24817 25582339 ~ 25583014 (-)
G39572 NA non-coding upstream 170715 25728237 ~ 25728470 (-)
G39574 NA non-coding upstream 225457 25782979 ~ 25783591 (-)
G39579 NA non-coding upstream 560952 26118474 ~ 26119083 (-)
G39413 LOC102215562 other downstream 275010 25281886 ~ 25282286 (-)
LOC122345923 NA other downstream 798628 24754202 ~ 24758668 (-)
naa38 naa38 other downstream 808686 24746672 ~ 24748610 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107746468,LOC107683706,LOC107595991,LOC107684355 other downstream 963180 24587724 ~ 24594116 (-)
tmc2a tmc2a,tmc1,LOC107684381,LOC107596032,LOC108437175,LOC107730318,LOC108259782 other downstream 1279992 24265464 ~ 24277304 (-)
LOC122344921 NA other upstream 4452 25561974 ~ 25568686 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other upstream 1542293 27099815 ~ 27107385 (-)
isca1 isca1,LOC107702919,LOC107662049 other upstream 1825399 27382921 ~ 27398741 (-)
LOC122344874 NA other upstream 2328519 27886041 ~ 27895454 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other upstream 2698306 28255828 ~ 28264704 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008848 CU655829.1 non-coding NC_007126.7 CM002899.2 47721873 ~ 47725335 (+)
rainbow trout (Oncorhynchus mykiss) G808262 NA non-coding NC_048573.1 CM023227.2 45074073 ~ 45074321 (+)