G39574


Basic Information

Item Value
gene id G39574
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 25782979 ~ 25783591 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU58520
aatggtttagctcctcaatacttgagcgagctcttatcacattatagtcctgcacgtccgctgcgttctcaaaactctggccatttgataatacctagaatatcaaaatcaactgcgggcggcagatctttttcctatctagcacctaaactctggaacaatctccctaactctgttcgggaagcagacacactctgccagtttaaatctagattaaagacacatctttttaacttagcctacacataacacaccaacacaccttttattattcaaatccgttaaaggatttttaggctgcattacttagatttgctggaaccgggaacactactcctacaatacgatgtacttgtgacatcgtaaaaagaatggcatctacgctaatattagtcctgtttctttctcaatctgttttcacagtttgtatccagactagatggtggatcagcacccagagattatgttcatcagagaccagaacacctagatgcgcccgtcgacagatcaccagatcctgatgcacacacacacacacgcacacgcacacactaagtcatttacactacctgacacagccgcgtttaaaattgaactggaagttaagtgctgg

Function

GO:

id name namespace
GO:0001917 photoreceptor inner segment cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58520 True 613 lncRNA 0.42 1 25782979 25783591

Neighbor

gene id symbol gene type direction distance location
kntc1 kntc1 coding downstream 74300 25655507 ~ 25708679 (-)
hip1rb hip1r,hip1rb,LOC107571022 coding downstream 131971 25618111 ~ 25651008 (-)
LOC122345798 dcx coding downstream 259142 25470652 ~ 25523837 (-)
LOC122345796 pak3,LOC107566210,LOC107712492,LOC103475835,LOC103141826,LOC108245238,LOC107093501 coding downstream 336317 25303475 ~ 25446662 (-)
zfpl1 zfpl1 coding downstream 519851 25231235 ~ 25263128 (-)
trnal-cag_26 NA coding upstream 94080 25877671 ~ 25877755 (-)
trnal-cag_27 NA coding upstream 103767 25887358 ~ 25887441 (-)
trnal-aag_30 NA coding upstream 104923 25888514 ~ 25888596 (-)
trnal-cag_28 NA coding upstream 106837 25890428 ~ 25890510 (-)
trnal-cag_29 NA coding upstream 108738 25892329 ~ 25892409 (-)
G39572 NA non-coding downstream 54509 25728237 ~ 25728470 (-)
G39514 NA non-coding downstream 199965 25582339 ~ 25583014 (-)
G39506 NA non-coding downstream 223761 25558875 ~ 25559218 (-)
G39503 NA non-coding downstream 225457 25557296 ~ 25557522 (-)
G39490 NA non-coding downstream 253868 25528883 ~ 25529111 (-)
G39579 NA non-coding upstream 334883 26118474 ~ 26119083 (-)
G39585 NA non-coding upstream 369874 26153465 ~ 26153703 (-)
LOC122344941 NA non-coding upstream 589028 26372619 ~ 26373822 (-)
G39712 NA non-coding upstream 1092999 26876590 ~ 26883175 (-)
G39738 LOC107705276,LOC107586737,LOC107671348,LOC107663665,LOC107721875 non-coding upstream 1298410 27082001 ~ 27084786 (-)
LOC122344921 NA other downstream 214293 25561974 ~ 25568686 (-)
G39413 LOC102215562 other downstream 500693 25281886 ~ 25282286 (-)
LOC122345923 NA other downstream 1024311 24754202 ~ 24758668 (-)
naa38 naa38 other downstream 1034369 24746672 ~ 24748610 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107746468,LOC107683706,LOC107595991,LOC107684355 other downstream 1188863 24587724 ~ 24594116 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other upstream 1316224 27099815 ~ 27107385 (-)
isca1 isca1,LOC107702919,LOC107662049 other upstream 1599330 27382921 ~ 27398741 (-)
LOC122344874 NA other upstream 2102450 27886041 ~ 27895454 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other upstream 2472237 28255828 ~ 28264704 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other upstream 3540391 29323982 ~ 29326115 (-)

Expression


Co-expression Network