LOC122344808 (LOC107671984)


Basic Information

Item Value
gene id LOC122344808
gene name LOC107671984
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27140415 ~ 27142658 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU58817
gaaattaaagacaattaactagaacggaaggtagggcacacagagcacatggtacaagacaaaaacgacaacaaaagagtccaaagacgtgacacaaGGACATGTGCATtatgaatgtcatttttgtaaagatgtttagattgtaaaatgttaatacaattcaaatgtgaaaattatgctGTATATTGTAGCGTGTAATCAATCTAAAATCTACTTATTCCCATAAACCATTCaacaaataattaagaaatacaaaaaacatcCATGAATCCAGCACAACTAGACAACTACGTCTGTAGAATCATGACGTGAGGAGCGCAGCAGCTACATACGGGCATTCttttttagaattctttgtTGGGAAGTTTGACGATTGTTGTGGTTGGTGCTATTGACGAGTTTCCATGGTGATTATTTCTTCGGTTATTGCATTTCGCCTTTTTTTGACTACCTTTCGGATTTTTGATATTGATTCTCGGTTTTGACCCTTTTCCGTTTTTGACGCTCGATTTTTGACTCGGTTTGGACTCCCGGTTTTGACCCTTTTTTCCGTTTTTGACTGCCGGCTTCGGATTCGTTGTGAACCCGCACACTGAAGAACATCCTTTCCTGAAATGGGATCGGTTGGTGTTTtaccagtgtgtGTGGAAACACCAAGGGCCGTGTTCGGTGTGCCCCTCATCAGCCTGAGGAAGAGAGGACAGATGAGGCAGGGTCTTCCTCTGGTGTTCACACACGTAGTGGAGATTGTGGAGAAGCACGCGTTCCTTCTGGCCCCACCATGTTTGAAGAACAGGGACAGTGTACTGCTTTGATAGAGCACCTGCTGGACAACCTGATCCACCTGCTGCCAAACATGTACCCTCATGCATCCACCAGTAACTCAGCAG
>XR_006250926.1
acaaaaacgacaacaaaagagtccaaagacgtgacacaaGGACATGTGCATtatgaatgtcatttttgtaaagatgtttagattgtaaaatgttaatacaattcaaatgtgaaaattatgctGTATATTGTAGCGTGTAATCAATCTAAAATCTACTTATTCCCATAAACCATTCaacaaataattaagaaatacaaaaaacatcCATGAATCCAGCACAACTAGACAACTACGTCTGTAGAATCATGACGTGAGGAGCGCAGCAGCTACATACGGGCATTCttttttagaattctttgtTGGGAAGTTTGACGATTGTTGTGGTTGGTGCTATTGACGAGTTTCCATGGTGATTATTTCTTCGGTTATTGCATTTCGCCTTTTTTTGACTACCTTTCGGATTTTTGATATTGATTCTCGGTTTTGACCCTTTTCCGTTTTTGACGCTCGATTTTTGACTCGGTTTGGACTCCCGGTTTTGACCCTTTTTTCCGTTTTTGACTGCCGGCTTCGGATTCGTTGTGAACCCGCACACTGAAGAACATCCTTTCCTGAAATGGGATCGGTTGGTGTTTtaccagtgtgtGTGGAAACACCAAGGGCCGTGTTCGGTGTGCCCCTCATCAGCCTGAGGAAGAGAGGACAGATGAGGCAGGGTCTTCCTCTGGTGTTCACACACGTAGTGGAGATTGTGGAGAAGCACGCGTTCCTTCTGGCCCCACCATGTTTGAAGAACAGGGACAGTGTACTGCTTTGATAGAGCACCTGCTGGACAACCTGATCCACCTGCTGCCAAACATGTACCCTCATGCATCCACCAGTAACTCAGCAgaCGATAGCAAATGGACTAATGAAGAGTGTGTCCCACAATTGCCGCTCTCAGAGACCAAattaaaGGTGCCTAAAATTGGAAGACTTGGGCGACTAAGA

Function

NR:

description
PREDICTED: protein FAM13A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58817 False 890 lncRNA 0.43 3 27140795 27142658
XR_006250926.1 True 930 lncRNA 0.43 5 27140415 27142600

Neighbor

gene id symbol gene type direction distance location
LOC122345424 klhl34,LOC107586735,LOC107671349,LOC107705277,LOC107721877,LOC107663667,LOC107590345 coding downstream 40696 27095380 ~ 27099719 (-)
LOC122345427 LOC107721568,LOC107697698,LOC107711701,LOC107654838,LOC108438743 coding downstream 125917 27001647 ~ 27014498 (-)
LOC122345425 rps6ka4,LOC107758164,LOC107698546,LOC107567284,LOC107702937,LOC108427766 coding downstream 139155 26997549 ~ 27001260 (-)
unga ung,unga,LOC107712535,LOC107687060,LOC107560323,LOC107752258,LOC107702903 coding downstream 238741 26897463 ~ 26901674 (-)
LOC122345160 mlxip,LOC107687059,LOC107712534,LOC107560310,LOC107702943 coding downstream 243193 26884570 ~ 26897222 (-)
LOC122344788 LOC107548517,LOC107662059 coding upstream 25607 27168265 ~ 27172894 (-)
spaw LOC107548501,LOC107662086,LOC107740019 coding upstream 134389 27277047 ~ 27280391 (-)
usp39 usp39,LOC107662055,LOC107739996,LOC107702962,LOC107722749 coding upstream 145514 27288172 ~ 27293486 (-)
mat2ab mat2ab,LOC107548521,LOC107662054,LOC107739995,LOC107556049,LOC107722750,LOC107702964,LOC106580346 coding upstream 159601 27302259 ~ 27308208 (-)
inpp5jb LOC107739994,LOC107548522,LOC107702965,LOC107662051,LOC107556011,LOC106585266 coding upstream 170231 27312889 ~ 27334798 (-)
LOC122344809 LOC107671984 non-coding downstream 11959 27127129 ~ 27128456 (-)
G39738 LOC107705276,LOC107586737,LOC107671348,LOC107663665,LOC107721875 non-coding downstream 55629 27082001 ~ 27084786 (-)
G39712 NA non-coding downstream 257240 26876590 ~ 26883175 (-)
LOC122344941 NA non-coding downstream 766593 26372619 ~ 26373822 (-)
G39585 NA non-coding downstream 986712 26153465 ~ 26153703 (-)
G39857 NA non-coding upstream 46192 27188850 ~ 27189222 (-)
G39870 NA non-coding upstream 82229 27224887 ~ 27225562 (-)
G39872 NA non-coding upstream 90000 27232658 ~ 27234162 (-)
G39888 NA non-coding upstream 122631 27265289 ~ 27267229 (-)
G39893 NA non-coding upstream 142524 27285182 ~ 27286194 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other downstream 33030 27099815 ~ 27107385 (-)
LOC122344921 NA other downstream 1571729 25561974 ~ 25568686 (-)
G39413 LOC102215562 other downstream 1858129 25281886 ~ 25282286 (-)
LOC122345923 NA other downstream 2381747 24754202 ~ 24758668 (-)
naa38 naa38 other downstream 2391805 24746672 ~ 24748610 (-)
isca1 isca1,LOC107702919,LOC107662049 other upstream 240263 27382921 ~ 27398741 (-)
LOC122344874 NA other upstream 743383 27886041 ~ 27895454 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other upstream 1113170 28255828 ~ 28264704 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other upstream 2181324 29323982 ~ 29326115 (-)
G40182 brinp1,LOC107715673,LOC107674904 other upstream 2317927 29460585 ~ 29490204 (-)

Expression


Co-expression Network