isca1 (isca1,LOC107702919,LOC107662049)


Basic Information

Item Value
gene id isca1
gene name isca1,LOC107702919,LOC107662049
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27382921 ~ 27398741 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU59072
GTTTACATCCAAACACGAAGTACATATGTAACTTCAACATGTCAGCCTCCATAGCACGGGCGACAGTGAGGGCGGTTAGCAGGCGGAAAATACTGCCAACAAGAGCCGCTTTAACGCTGACGCCTTCAGCCGTGAATAAAGTCAAGCAGCTTTTACAGAACAAGCCAGAATATATCGGCCTCAAGGTTGGCGTTCGGACCCGCGGTTGCAATGGCCTCACTTACACACTAGACTACactaaagagaaagacaaatcAGATGAGGAGGTGTTACAAGATGGCGCGAGAGTGTTCATCGAGAAGAAGGCTCAGCTGACGCTGCTCGGCACGGAGATGGATTTTGTTGAAACGAAACTTTCCAGCGAGTTTGTGTTCAACAATCCCAACATCAAAGGGACGTGTGGCTGTGGGGAAAGCTTCAACATATGAACCCCGCCGCACGTTTGGCTTCGTCTAAAGCTCGGGCCCTCCAGGACATCTAGTCCAGATCCTTAGATTCAAACATCCATCTTGAAGATTTTGTGGGTAAAGAGCCGTAGAAAGAGACTGATATTTAGTGGCCTGTTCGGCCGTCATGTCCTGTGCTGCCTCCGTTCGCCTCGACCCAGACCCAGAAAAGCCCTGCTTACAAATACAGCCGTTAACTTAGAAACCAGTTCATTTCATTGCTTCTACACACTTTATGGAGCAGCTCGGGTGTGCGTTCGACGCGGAGGTTTCCGGGTGCGCTCCGTGTTAGTGCTTAACGAATAATAAACTGCTTTGTTGTTTTCTCAGAACTGTCTGTCATCCGTTCGCTCCGATAGGGATTCATATTTGATAATCCAGTTAATATGTCGTGAGGATTATCCTGCTGGATGTCGTAACGCGTCCTCCTAAATGTACACCACAACAAACCGGCAGTTGCTTCGTGAATGGTGGATCAGCAGTGCAAATATGTAATAATCTACATAATATCGAAAGGTTTCTCGTTCTGGCGGATGTTGAGTCAGCTTTGCACTTTCAGCATGCCACGTTTTGCTCTACAATGTGATTAACAAGCAGCACAGGATCTGATGCCAAGCtttgaaatgcaattattttgacTTGAACTTGTTTTCTGTTGAAGTATGAGTGTGATATGTACATAACAATGTAAATCCCTTCGACTGTCTTTTAACGCACAAATAAACTTCCATTCTACCTAaaaaaaaaaaaaaaaaaaaaaa
>XM_043240820.1
TTCCTTTGCATTACCCCTGGTGTTTACATCCAAACACGAAGTACATATGTAACTTCAACATGTCAGCCTCCATAGCACGGGCGACAGTGAGGGCGGTTAGCAGGCGGAAAATACTGCCAACAAGAGCCGCTTTAACGCTGACGCCTTCAGCCGTGAATAAAGTCAAGCAGCTTTTACAGAACAAGCCAGAATATATCGGCCTCAAGGTTGGCGTTCGGACCCGCGGTTGCAATGGCCTCACTTACACACTAGACTACactaaagagaaagacaaatcAGATGAGGAGGTGTTACAAGATGGCGCGAGAGTGTTCATCGAGAAGAAGGCTCAGCTGACGCTGCTCGGCACGGAGATGGATTTTGTTGAAACGAAACTTTCCAGCGAGTTTGTGTTCAACAATCCCAACATCAAAGGGACGTGTGGCTGTGGGGAAAGCTTCAACATATGAACCCCGCCGCACGTTTGGCTTCGTCTAAAGCTCGGGCCCTCCAGGACATCTAGTCCAGATCCTTAGATTCAAACATCCATCTTGAAGATTTTGTGGGTAAAGAGCCGTAGAAAGAGACTGATATTTAGTGGCCTGTTCGGCCGTCATGTCCTGTGCTGCCTCCGTTCGCCTCGACCCAGACCCAGAAAAGCCCTGCTTACAAATACAGCCGTTAACTTAGAAACCAGTTCATTTCATTGCTTCTACACACTTTATGGAGCAGCTCGGGTGTGCGTTCGACGCGGAGGTTTCCGGGTGCGCTCCGTGTTAGTGCTTAACGAATAATAAACTGCTTTGTTGTTTTCTCAGAACTGTCTGTCATCCGTTCGCTCCGATAGGGATTCATATTTGATAATCCAGTTAATATGTCGTGAGGATTATCCTGCTGGATGTCGTAACGCGTCCTCCTAAATGTACACCACAACAAACCGGCAGTTGCTTCGTGAATGGTGGATCAGCAGTGCAAATATGTAATAATCTACATAATATCGAAAGGTTTCTCGTTCTGGCGGATGTTGAGTCAGCTTTGCACTTTCAGCATGCCACGTTTTGCTCTACAATGTGATTAACAAGCAGCACAGGATCTGATGCCAAGCtttgaaatgcaattattttgacTTGAACTTGTTTTCTGTTGAAGTATGAGTGTGATATGTACATAACAATGTAAATCCCTTCGACTGTCTTTTAACGCACAAATAAACTTCCATTCTACCTA

Function

symbol description
isca1 Predicted to enable 2 iron, 2 sulfur cluster binding activity. Acts upstream of or within heme biosynthetic process. Predicted to be active in mitochondrion. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in multiple mitochondrial dysfunctions syndrome 5. Orthologous to human ISCA1 (iron-sulfur cluster assembly 1).

NR:

description
iron-sulfur cluster assembly 1 homolog, mitochondrial

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0006783 heme biosynthetic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59072 True 1207 TUCP 0.45 5 27382921 27398720
XM_043240820.1 False 1206 mRNA 0.46 4 27395389 27398741

Neighbor

gene id symbol gene type direction distance location
inpp5jb LOC107739994,LOC107548522,LOC107702965,LOC107662051,LOC107556011,LOC106585266 coding downstream 48123 27312889 ~ 27334798 (-)
mat2ab mat2ab,LOC107548521,LOC107662054,LOC107739995,LOC107556049,LOC107722750,LOC107702964,LOC106580346 coding downstream 74713 27302259 ~ 27308208 (-)
usp39 usp39,LOC107662055,LOC107739996,LOC107702962,LOC107722749 coding downstream 89435 27288172 ~ 27293486 (-)
spaw LOC107548501,LOC107662086,LOC107740019 coding downstream 102530 27277047 ~ 27280391 (-)
LOC122344788 LOC107548517,LOC107662059 coding downstream 210027 27168265 ~ 27172894 (-)
tut7 zcchc6,LOC107740015,LOC107662083,LOC107702897,LOC107728196,LOC107556044,LOC107556045 coding upstream 672 27399413 ~ 27414999 (-)
psat1 psat1,LOC107548526,LOC107556046 coding upstream 16567 27415308 ~ 27421004 (-)
tmem116 si:ch211-157p22.10,LOC107740032,LOC107548513,LOC107556047,LOC107728188,LOC107662092,LOC107702969 coding upstream 23015 27421756 ~ 27431616 (-)
zgc:153044 NA coding upstream 35836 27434577 ~ 27436450 (-)
kiss1rb kiss1rb,LOC107728362,LOC107702921 coding upstream 40340 27439081 ~ 27445470 (-)
G39893 NA non-coding downstream 96727 27285182 ~ 27286194 (-)
G39888 NA non-coding downstream 115692 27265289 ~ 27267229 (-)
G39872 NA non-coding downstream 148759 27232658 ~ 27234162 (-)
G39870 NA non-coding downstream 157359 27224887 ~ 27225562 (-)
G39857 NA non-coding downstream 193699 27188850 ~ 27189222 (-)
G39935 NA non-coding upstream 139747 27538488 ~ 27538861 (-)
G39936 NA non-coding upstream 140199 27538940 ~ 27539327 (-)
G39951 rgs3a,LOC107702900,LOC107728018,LOC107556028,LOC107558862,LOC107693410 non-coding upstream 251709 27650450 ~ 27650827 (-)
G39964 NA non-coding upstream 349719 27748460 ~ 27789829 (-)
G40021 NA non-coding upstream 496902 27895643 ~ 27895961 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other downstream 275536 27099815 ~ 27107385 (-)
LOC122344921 NA other downstream 1814235 25561974 ~ 25568686 (-)
G39413 LOC102215562 other downstream 2100635 25281886 ~ 25282286 (-)
LOC122345923 NA other downstream 2624253 24754202 ~ 24758668 (-)
naa38 naa38 other downstream 2634311 24746672 ~ 24748610 (-)
LOC122344874 NA other upstream 487300 27886041 ~ 27895454 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other upstream 857087 28255828 ~ 28264704 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other upstream 1925241 29323982 ~ 29326115 (-)
G40182 brinp1,LOC107715673,LOC107674904 other upstream 2061844 29460585 ~ 29490204 (-)
eng LOC107562335,LOC107704777,LOC107741503 other upstream 2215978 29614719 ~ 29655061 (-)

Expression


Co-expression Network