LOC122344874


Basic Information

Item Value
gene id LOC122344874
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27886041 ~ 27895454 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU59237
ACCGCTGCTCTCCTGTGGTCCGGCGGAAGTAAGGAGTCTTCCCGGTGAAGAGAGATGGCTCTTATCAAACAGGAGAGTGAAGACCTGAGGATCGTAGAAGTATTCAGCCTGAAACATGAAGAgactgaggaacaaacagCCTTGCATTACCCCTCTTGACTGGCGAAGCCAACCCGGAGCTGCGGAGAGCGATATTGGCGCACGTAGGACTGTCCCCCATTTCGAACACAAGCGGCCAAACTCACTCGACTCGCCCAGCATTGGCTGTTAGAGGGGTCTTCGTCAGCCAGTCAGGTAGCGGAGCAGATCGTTGTAGACCGCTTCCTGCGAGCCCTGCCGCGGTCCTATTGTCAGGCTGTGCGGATGCGGCCCAACCTTGGGAGCCTGGGGAGTGAACCCGAGGGCACCTGACGACCCGTACACAGGCCAATGGTTCCCTCTGCACCAGACGAACCGATTGCCCCCTAGAcctggctggcaggctgcatcGTACACCAAGAACCATCGTCCTTCAGAAGCCGAGCgtaaaaataaacaggaaacCCTACCGAGCCCTCATCGATTCTGGCAGTGCAGTCACACTTGTTCGGGCAAGCATCCTGGCTCCACGGCCGGAAACAAAGGTCTTCATCCCTATAACTTGTGTGCACAGTGAAACATGGCAAGTACCCTCGAGAAGGATTAACCTGTTGACCCTGTCGTCCACCTGGCCCTTTGAAGTCGGTAACGTGAAGGACCTTCCCATCCCGCTGCTATTGGGACGAGACTGGCCCGGTTTTGACCGCCTGCTAGCTTCTGCCTCCCAGCCTGTCAGCCACAGAGGGAACCGCAGACAATGGAGGCCAACCAGAAGGACCCAACACCAGCCAACGCTGCTGGCTTCCGACAGcagaagagatggtgagtccccctTCCAAAATTCTAACCTTTTCCTTGATGTCTTTCAGCAGGTTACGGAAGGGTCTCGTTCGCTAAGGCCCAGAAGGAGGATGACCACCTGAAGCACTGTTGGCCCCAGGTCAGCGTCATTAAATGAGGGGGGAGGAGAAATTATTCGGTGGTTCCTCAATCCAAGACAGAGACGATCCTGGAACTCGCCCTTACGTACCCAATGGCCCAACACTTAGGCGTCGCCAACACATGCCAGCGTATCTGTGATCGATTTCACTGGCCTGGAGGCCGAGGTGAGGAGCTTTTGTCAAGCctgcccttcgagcgcatcgggatggactTGGTAGGACTGTTGCCGAGGCCTACCCAGGGACACGAACACATATTGGTCATCGTGGATTATGCCACCTTATACTTGGAAGTGGTTCCCCCTACGAAAAGCCACCACCAAGGCCATCGCGAAGGAACTCTTCCTTCTCTTTAGTAGGGTTGGCATTCCCAACAAGATCCTGACTGACCAGGGTACCCCCTTCATGTCCCGGCTAATAGCTGACCTCTGCTGGCTGTTGAAGGTGAAGCAGTTGAGGACCACAATCTACCATCCCCAAACAGATGGTCTCGTGGAGCGATTCAATCAAACCCTAAAACAAATGCTACGGCACATGGTGTCCAAAGGCCGACGGGACTGGGACCTGATACTCCTGTATGCGCTCTTTGAAATCCGGGAAGCCCCCCAGGCCTCAACTAGCTCAAGCTCCTCTTTGGCCGGCAGCCCCTTGGCCTCCTGGATGTCACCAAGGAGGAATGGGAACAACACCCAGCACCCCACCGCACCGTAATTGAACACGTAAGGGAAATGAGAGCGAGAAAAGATTGCATCATTGCCATTAGTCCGGGAACATTTGAGCAAAGCCCAACAAGCTCAGCAGCGGCATTACAATCGGGCAGCACAACCATGGGAGTTCCAGCCTGGAGACAAGGCAATGGTCCTTGTTCCCACCTCCGCCTGCAAATTCCTTGCGATTTGGCAGGAACCATACACGGTGATGTAACAAATTGGCCCACTTATCGTCTGCACCAGCCTGGCCAAAGGCGTACTGAACAGTTATACCACATTAACCTACTCAAAAGATGGAGAGGGAACGAGGACCAGATTGCATCCTCTGATCCCGTGGTTGTAGACGTCAACCCCCATCTctcggctgcccagaagggggaGCTCCAGCATCAGATTGGTCAGTTCTCGCATGTGTTCTCATCATGCCCCGGGCAGACGAACGTCATCAAGTACAAGATCCGAACGGCCCCAGGAGTTATCGTCCGGCAACTGCCTTACCAGGTCCCAGAGGCTCGTCAGCAGGGTATTGAGGAGGAAGTACAACAAATTCTCAAGTTAggggtgattgaaccatcgTCACCAAGCTGGAACGGCGAGGCATGCCAGAGAGTTGGTGCTGTCACTAACGTGTTCTCTCCATTTTCTCCTAGACTGCAGCGTGTGATCCGATCAGCCCACACGCCAGGCACAGAGACTCACCAGGGGAAGAGAGCACCGCAGCACCTGTCATGCCTTTGGACACTTTTGCACCCGTatcattcttttgtttatttaataaatctacCCTCCGGggtatttattttg
>XM_043238492.1
ACCCGAGGGCACCTGACGACCCGTACACAGGCCAATGGTTCCCTCTGCACCAGACGAACCGATTGCCCCCTAGAcctggctggcaggctgcatcGTACACCAAGAACCATCGTCCTTCAGAAGCCGAGCgtaaaaataaacaggaaacCCTACCGAGCCCTCATCGATTCTGGCAGTGCAGTCACACTTGTTCGGGCAAGCATCCTGGCTCCACGGCCGGAAACAAAGGTCTTCATCCCTATAACTTGTGTGCACAGTGAAACATGGCAAGTACCCTCGAGAAGGATTAACCTGTTGACCCTGTCGTCCACCTGGCCCTTTGAAGTCGGTAACGTGAAGGACCTTCCCATCCCGCTGCTATTGGGACGAGACTGGCCCGGTTTTGACCGCCTGCTAGCTTCTGCCTCCCAGCCTGTCAGCCACAGAGGGAACCGCAGACAATGGAGGCCAACCAGAAGGACCCAACACCAGCCAACGCTGCTGGCTTCCGACAGcagaagagatgACTTGATGACAATAAAAGAAGAGCGTCAAGAAGCGAAAGAAATAGAAGAGAAATATCAATATAAGAGGCGTGATTTCTTGGCTGTAGAAAAATCCATACCGACTGAAAGAAATTCCGTTCAGAAGACCAAACCTCCCAGTTACTTAACTTGTCACGAATGTGGAAAGTGTTTCACAATAAAAGGAAACCTTAATGAACACATGAAAACTCACATTAGAGAGACGCCATTCCCGTGTCTATACTGTGGGAAGACTTTCAAACTAAAAGGAAGCCTGGATGAACACGTGACCATTCACACTAGAGGAACTCTGTTGTTCACTTGTGATTGGTGTAGAAAGAGTTTCAGATCTCAAGGCACTTTAAACACCCACATGAGAGTTCACTCCGGAGAGAAACCCTTCACCTGCCAGCACTGTGGAAGGAGTTTCACACTGAAAGCAAACCTTAAACAACACCTGAAGATTCACTCCGGAGAGAAGACATTCATCTGCCTGCACTGTGGGAAGAGTTTCCTCACAAGAAGAACCCTGAATCAACACACAAGCATTCACTCTGGGAAACCATTCACTTGTGATCAGTGTGGAAGGAGTTACAAATACGAAGAGAGCCTGAAGTCCCACATGAgggttcacaccggagagaagtcCTTCGTTCGTGATCAGTCTGGACACGGAGAGGGTGGTTTTCATCAGTGTGATCGGTGTGGAGAGAGCTTCAGCTGTAAAGTAAGCCTCTACACTCATGTGAGACTTCATACTACAGAGAAGGCTTTCACCTGCCAGCTGTGTGGAGATAGCTTCTTACAAAACGGAAATCTGAAGTCCCACATgaggattcacaccggagagaaacgatcggtgtggaaagagtttcagacGTGACCCTTGATTCACACGGGAAGAGGAAATGGATCATAAATAGACTTTGAACAGATTAAATGTTGTTAATACCAAGCAAATGTAAAGAAATGACGTGACTGgggatgtttgttttaatggcaccagaaaatatgtgaaaatagGTGAAATTCACACTGAAGTGGCTCAAAGCTGATTGTCTACTTTCATAACTTTTgcattctttgttttttctatgtattggctttttattttgtctttgcatgtttttgcattcaTGCCAATGTGATTTAGAGgatttacaaagaaaaagtgATGGCGCAATTGAATAAAATCTACCCATTGCCCTTTTCAACATAAAACCAACAGAGCCTAGCTCCTGTCAAATTATTAGAATTAGTTTTTAACCATGTGTACTGCTTGACTCTGGGAAACTCCCTCCACACATCCACTAAACTATGtttattgattcatttctttaaacTCTCAGCAGAAGGATGGTGAGGTTCATCATGATTCCTGTCCCAATATGAATTAACAGTACAATTAAAATCTCCACCGAGGACAACATTTTCCTGAGGACACTATAATAAGGCATCAGAAAGTATTTTATCAAAGAAGAGCCAATCTTGACCATCATTTGTTgcaaacacattaataaaagaaaaataagcatCACCAACAGCAATATCAGCGCTCAAAATCCAGCCAGGTGTTATTTGTATACTaacaaatggagaaaaaaagaatggcaaCTCCTGCACTTAAGGTTTGTACCGTGACTTAATAAATCACCACCTTTATATTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59237 True 2533 TUCP 0.54 4 27889123 27895454
XM_043238492.1 False 2171 mRNA 0.44 2 27886041 27891340

Neighbor

gene id symbol gene type direction distance location
LOC122346185 ugt2a4,ugt2a3,ugt2a1,LOC107548539,LOC107728043,LOC107556031,LOC107702978,LOC107728060,LOC107702979,LOC107693409,LOC107739983 coding downstream 270585 27605812 ~ 27615456 (-)
LOC122345116 ugt2a3,LOC107728060,LOC107702979,LOC107556030,LOC107728043,LOC107556031,LOC107702978,LOC107548539 coding downstream 281632 27593593 ~ 27604409 (-)
ythdc1 ythdc1,LOC107693408,LOC107702977,LOC107728241 coding downstream 296131 27575738 ~ 27589910 (-)
rilpl2 rilpl2,LOC107728107,LOC107702927 coding downstream 340791 27542420 ~ 27545250 (-)
mob1a LOC107739988,LOC107675956,LOC107702973,LOC101160416,LOC103363194,LOC107087288,LOC103031464,LOC101481896 coding downstream 360627 27522065 ~ 27525414 (-)
LOC122344872 NA coding upstream 14773 27910227 ~ 27914589 (-)
LOC122346138 astn2,LOC107675510,LOC107683760,LOC106563268,LOC106565912 coding upstream 441947 28337401 ~ 28683169 (-)
LOC122344834 LOC108430399,LOC107568487,LOC105913012,LOC103355419 coding upstream 1048287 28943741 ~ 28944764 (-)
brinp1 brinp1 coding upstream 1279497 29174951 ~ 29270700 (-)
LOC122345544 ubr2,LOC107669566,LOC107696377 coding upstream 1407689 29303143 ~ 29323685 (-)
G39964 NA non-coding downstream 96212 27748460 ~ 27789829 (-)
G39951 rgs3a,LOC107702900,LOC107728018,LOC107556028,LOC107558862,LOC107693410 non-coding downstream 235214 27650450 ~ 27650827 (-)
G39936 NA non-coding downstream 346714 27538940 ~ 27539327 (-)
G39935 NA non-coding downstream 347180 27538488 ~ 27538861 (-)
G39893 NA non-coding downstream 599847 27285182 ~ 27286194 (-)
G40021 NA non-coding upstream 189 27895643 ~ 27895961 (-)
G40057 NA non-coding upstream 284754 28180208 ~ 28180575 (-)
G40058 NA non-coding upstream 285170 28180624 ~ 28180999 (-)
G40074 pappaa,LOC107558864,LOC107675511,LOC107739977,LOC107728218,LOC107556005 non-coding upstream 347207 28242661 ~ 28243655 (-)
G40076 pappaa,pappa,LOC107739977,LOC107675511,LOC107558864,LOC107728218,LOC107556005,LOC106563270 non-coding upstream 350964 28246418 ~ 28246665 (-)
isca1 isca1,LOC107702919,LOC107662049 other downstream 487300 27382921 ~ 27398741 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other downstream 778656 27099815 ~ 27107385 (-)
LOC122344921 NA other downstream 2317355 25561974 ~ 25568686 (-)
G39413 LOC102215562 other downstream 2603755 25281886 ~ 25282286 (-)
LOC122345923 NA other downstream 3127373 24754202 ~ 24758668 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other upstream 360374 28255828 ~ 28264704 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other upstream 1428528 29323982 ~ 29326115 (-)
G40182 brinp1,LOC107715673,LOC107674904 other upstream 1565131 29460585 ~ 29490204 (-)
eng LOC107562335,LOC107704777,LOC107741503 other upstream 1719265 29614719 ~ 29655061 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other upstream 2029248 29924702 ~ 29928675 (-)

Expression


Co-expression Network