G40080 (pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218)


Basic Information

Item Value
gene id G40080
gene name pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 28255828 ~ 28264704 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU59335
TCCACATATCTTCTCATTGAGTCTCTTAGCATGACGCCCTGGGTTGAGTGAAGAAACGCTGGCTGGCGCAGGAGCAGATAATGCAGTGGCTCGCATTCTCGACAGAGTGGGCAATCAGGTTTAGACGTGAGCAGAGTGGCATCAATTTCCAAATGTTGCTCCATGGTGAAAAACTGCACGCCATACACCTTCTCATGCACATCCAGCTTGATGGTCAGCGGTGTGTCGCAGAACAAATTACTGGGACCCAGAGACAGGTTGTTGCCACTGACAGTCAATAGGATGATATTGTGGATGGCAGGCAGAACTGTTTCCTCCTGGGAGGAGAAGGTCACCCACACCGTGAGGGAGTCAGGGACCACCGGATATGCAAACTCCAGCTGTAACATGCAGCCTTGCAGAGGGCAGGGGGGAGGCACCCTTCTCAGATCCATGCCGTTATGTGGACTCCACGTGCGGACGCTGGAGTCCTGTCTCTGTTCTACCACTTGAGGTGCCATGGGGACTGGAGGCGGCTGGTACTCGGGTTGCCAGGTCTGGTAGATGAGGTCCAAGTAGCAGTGCATGCGAGCCACCTGGTTAAGCGTAAAGGAATCAGTGCAGT

Function

symbol description
pappaa Predicted to enable metalloendopeptidase activity. Acts upstream of or within habituation and insulin-like growth factor receptor signaling pathway. Is expressed in Mauthner neurons; anterior lateral line ganglion; hindbrain interneuron; posterior lateral line ganglion; and statoacoustic (VIII) ganglion. Human ortholog(s) of this gene implicated in myocardial infarction. Orthologous to human PAPPA (pappalysin 1).
pappa Enables metalloendopeptidase activity. Predicted to be involved in cellular protein metabolic process. Located in extracellular region. Implicated in myocardial infarction. Biomarker of artery disease (multiple); degenerative disc disease; and type 2 diabetes mellitus.

NR:

description
PREDICTED: pappalysin-1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59335 True 604 TUCP 0.54 2 28255828 28264704

Neighbor

gene id symbol gene type direction distance location
LOC122344872 NA coding downstream 341239 27910227 ~ 27914589 (-)
LOC122346185 ugt2a4,ugt2a3,ugt2a1,LOC107548539,LOC107728043,LOC107556031,LOC107702978,LOC107728060,LOC107702979,LOC107693409,LOC107739983 coding downstream 640372 27605812 ~ 27615456 (-)
LOC122345116 ugt2a3,LOC107728060,LOC107702979,LOC107556030,LOC107728043,LOC107556031,LOC107702978,LOC107548539 coding downstream 651419 27593593 ~ 27604409 (-)
ythdc1 ythdc1,LOC107693408,LOC107702977,LOC107728241 coding downstream 665918 27575738 ~ 27589910 (-)
rilpl2 rilpl2,LOC107728107,LOC107702927 coding downstream 710578 27542420 ~ 27545250 (-)
LOC122346138 astn2,LOC107675510,LOC107683760,LOC106563268,LOC106565912 coding upstream 72697 28337401 ~ 28683169 (-)
LOC122344834 LOC108430399,LOC107568487,LOC105913012,LOC103355419 coding upstream 679037 28943741 ~ 28944764 (-)
brinp1 brinp1 coding upstream 910247 29174951 ~ 29270700 (-)
LOC122345544 ubr2,LOC107669566,LOC107696377 coding upstream 1038439 29303143 ~ 29323685 (-)
LOC122345545 LOC107728794,LOC107590009,LOC107696375,LOC107696371,LOC107578696,LOC108263699 coding upstream 1061279 29325983 ~ 29335688 (-)
G40079 pappaa,LOC107739977,LOC107558864,LOC107675511,LOC107556005,LOC107728218 non-coding downstream 621 28254921 ~ 28255207 (-)
G40076 pappaa,pappa,LOC107739977,LOC107675511,LOC107558864,LOC107728218,LOC107556005,LOC106563270 non-coding downstream 9163 28246418 ~ 28246665 (-)
G40074 pappaa,LOC107558864,LOC107675511,LOC107739977,LOC107728218,LOC107556005 non-coding downstream 12173 28242661 ~ 28243655 (-)
G40058 NA non-coding downstream 74829 28180624 ~ 28180999 (-)
G40057 NA non-coding downstream 75253 28180208 ~ 28180575 (-)
G40081 NA non-coding upstream 28022 28292726 ~ 28292937 (-)
G40083 NA non-coding upstream 62193 28326897 ~ 28330476 (-)
G40264 NA non-coding upstream 1381913 29646617 ~ 29647013 (-)
G40266 NA non-coding upstream 1420424 29685128 ~ 29685727 (-)
G40268 LOC107741500,LOC107562332,LOC107704753 non-coding upstream 1536490 29801194 ~ 29805802 (-)
LOC122344874 NA other downstream 360374 27886041 ~ 27895454 (-)
isca1 isca1,LOC107702919,LOC107662049 other downstream 857087 27382921 ~ 27398741 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other downstream 1148443 27099815 ~ 27107385 (-)
LOC122344921 NA other downstream 2687142 25561974 ~ 25568686 (-)
G39413 LOC102215562 other downstream 2973542 25281886 ~ 25282286 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other upstream 1059278 29323982 ~ 29326115 (-)
G40182 brinp1,LOC107715673,LOC107674904 other upstream 1195881 29460585 ~ 29490204 (-)
eng LOC107562335,LOC107704777,LOC107741503 other upstream 1350015 29614719 ~ 29655061 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other upstream 1659998 29924702 ~ 29928675 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other upstream 1823262 30087966 ~ 30093576 (-)

Expression


Co-expression Network