LOC122345120 (LOC107728794,LOC107696375,LOC107590009,LOC107739482)


Basic Information

Item Value
gene id LOC122345120
gene name LOC107728794,LOC107696375,LOC107590009,LOC107739482
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 29323982 ~ 29326115 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU59464
CCAACGCGGTGATGCAACAAGCCGCTATCATCCTGCAAATAGAGGAATCCATGCCCTGTCTGAGACGTTGCTATGACAACGAGTACATCCACCAGCGCTGCGCCCCGCTCGGTGAATTCTACGACGATGACGTCACCACTAACCCAGAACAACACGCAGAGATGAAGAAGCTCACGGAACAGATCAAGGTGCCTGCATTGACGGCCGCCGCGTGTGCTGTCTGTCGCATCCCAGGATAACTGAGTCTTTGCATGTTCTGCAGGATACTTTAGATAAATATTTGAGCATCCAGAAGGAGACCCTCTCACCCCAGCTAGCCTGCGCAGGTGCCAGAGAAGATACCACAAGgaGAAGCGCTGCGCTTCCAGAGAAAGAAGAACATCTCAAGACTCTTCACAGACTTCAGAAGGACCAGCAGAAGCAGAGTCAGGACCTCAGTGAGCTGAAGGCCGAAGTGAAGGAACTCCACAGTTTGCTTCTCAAACTAATACAGCCCAAGATATctgctGATGATGACAAGAAACCCTCAAATCAACCTAGCTTACAGTAAAAAACTCTGAAACTAACAAACGGAGTGCAGAAATCTATATTTAGTTCACAAAGACTTCGTAATTTTGCAACCTGCAGTTGTTATGCATTGTACCCGAGTTACTGTAACACTATCTGCATATTTGCACCTATATTAGAGTGgctttatttgaatgattttaatgataaaatgtgAAACAAGATGTTTAAGTCTCTCGTTTCTTTCAGTtgtaatcagaaatgtttgttgggCAGCACGacaggatgatttctgaagtattgaagactggagtgacaACGCTGAAAATACACTCtgcatcgcagg
>TU59465
CCAACGCGGTGATGCAACAAGCCGCTATCATCCTGCAAATAGAGGAATCCATGCCCTGTCTGAGACGTTGCTATGACAACGAGTACATCCACCAGCGCTGCGCCCCGCTCGGTGAATTCTACGACGATGACGTCACCACTAACCCAGAACAACACGCAGAGATGAAGAAGCTCACGGAACAGATCAAGGTGCCTGCATTGACGGCCGCCGCGTGTGCTGTCTGTCGCATCCCAGGATAACTGAGTCTTTGCATGTTCTGCAGGATACTTTAGATAAATATTTGAGCATCCAGAAGGAGACCCTCTCACCCCAGCTAGCCTGCGCAGGTGCCAGAGAAGATACCACAAGgaGAAGCGCTGCGCTTCCAGAGAAAGAAGAACATCTCAAGACTCTTCACAGACTTCAGAAGGACCAGCAGAAGCAGAGTCAGGACCTCAGTGAGCTGAAGGCCGAAGTGAAGGAACTCCACAGTTTGCTTCTCAAACTAATACAGCCCAAGATATctgctGATGATGACAAGAAACCCTCAAATCAACCTAGCTTACAGTAAAAAACTCTGAAACTAACAAACGGAGTGCAGAAATCTATATTTAGTTCACAAAGACTTCGTAATTTTGCAACCTGCAGTTGTTATGCATTGTACCCGAGTTACTGTAACACTATCTGCATATTTGCACCTATATTAGAGTGgctttatttgaatgattttaatgataaaatg
>XM_043238949.1
ATGGAGACGGTTCCTGTTCTGCTGTACAGCCTGTACCGCATCACGCTGGTGGACGAGTATGAGTTTGATGCCATGCTGGATGTGGATGCGGTGATGGCCTGCCTGCTGTGTGGGGCGTTCCTGGCCCTGTCTGCTGTTCTCTGGTCTACGACAGCGCTGGCCAACGCGGTGATGCAACAAGCCGCTATCATCCTGCAAATAGAGGAATCCATGCCCTGTCTGAGACGTTGCTATGACAACGAGTACATCCACCAGCGCTGCGCCCCGCTCGGTGAATTCTACGACGATGACGTCACCACTAACCCAGAACAACACGCAGAGATGAAGAAGCTCACGGAACAGATCAAGGATACTTTAGATAAATATTTGAGCATCCAGAAGGAGACCCTCTCACCCCAGCTAGCCTGCGCAGGTGCCAGAGAAGATACCACAAGgaGAAGCGCTGCGCTTCCAGAGAAAGAAGAACATCTCAAGACTCTTCACAGACTTCAGAAGGACCAGCAGAAGCAGAGTCAGGACCTCAGTGAGCTGAAGGCCGAAGTGAAGGAACTCCACAGTTTGCTTCTCAAACTAATACAGCCCAAGATATctgctGATGATGACAAGAAACCCTCAAATCAACCTAGCTTACAGTAAAAAACTCTGAAACTAACAAACGGAGTGCAGAAATCTATATTTAGTTCACAAAGACTTCGTAATTTTGCAACCTGCAGTTGTTATGCATTGTACCCGAGTTACTGTAACACTATCTGCATATTTGCACCTATATTAGAGTGgctttatttgaatgattttaatgataaaatgtgAAACAAGA

Function

NR:

description
PREDICTED: transient receptor potential channel pyrexia-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59464 True 853 lncRNA 0.46 3 29323982 29325074
TU59465 False 721 lncRNA 0.46 3 29324114 29325074
XM_043238949.1 False 817 mRNA 0.48 5 29324104 29326115

Neighbor

gene id symbol gene type direction distance location
LOC122345544 ubr2,LOC107669566,LOC107696377 coding downstream 297 29303143 ~ 29323685 (-)
brinp1 brinp1 coding downstream 53282 29174951 ~ 29270700 (-)
LOC122344834 LOC108430399,LOC107568487,LOC105913012,LOC103355419 coding downstream 379218 28943741 ~ 28944764 (-)
LOC122346138 astn2,LOC107675510,LOC107683760,LOC106563268,LOC106565912 coding downstream 640813 28337401 ~ 28683169 (-)
LOC122344872 NA coding downstream 1409393 27910227 ~ 27914589 (-)
ak1 ak1,kad,LOC107704768,LOC107715674,LOC107674927 coding upstream 334903 29661018 ~ 29670185 (-)
gpsm1b LOC107741501,LOC107704761,LOC107562333,LOC107597941,LOC107674924,LOC107744057 coding upstream 347118 29673233 ~ 29698626 (-)
fam78ab fam78ab,fam78a,LOC107704739,LOC107562331,LOC107674928,LOC107745627,LOC107741498,LOC107597938 coding upstream 512524 29838639 ~ 29846990 (-)
prrc2b prrc2b,LOC107704672 coding upstream 533437 29859552 ~ 29880103 (-)
LOC122344958 LOC107690080,LOC107566862,LOC107728455 coding upstream 584797 29910912 ~ 29919495 (-)
G40083 NA non-coding downstream 993506 28326897 ~ 28330476 (-)
G40081 NA non-coding downstream 1031045 28292726 ~ 28292937 (-)
G40079 pappaa,LOC107739977,LOC107558864,LOC107675511,LOC107556005,LOC107728218 non-coding downstream 1068775 28254921 ~ 28255207 (-)
G40076 pappaa,pappa,LOC107739977,LOC107675511,LOC107558864,LOC107728218,LOC107556005,LOC106563270 non-coding downstream 1077317 28246418 ~ 28246665 (-)
G40074 pappaa,LOC107558864,LOC107675511,LOC107739977,LOC107728218,LOC107556005 non-coding downstream 1080327 28242661 ~ 28243655 (-)
G40264 NA non-coding upstream 320502 29646617 ~ 29647013 (-)
G40266 NA non-coding upstream 359013 29685128 ~ 29685727 (-)
G40268 LOC107741500,LOC107562332,LOC107704753 non-coding upstream 475079 29801194 ~ 29805802 (-)
LOC122344857 NA non-coding upstream 713339 30039454 ~ 30046148 (-)
LOC122345788 NA non-coding upstream 727497 30053612 ~ 30054797 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other downstream 1059278 28255828 ~ 28264704 (-)
LOC122344874 NA other downstream 1428528 27886041 ~ 27895454 (-)
isca1 isca1,LOC107702919,LOC107662049 other downstream 1925241 27382921 ~ 27398741 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other downstream 2216597 27099815 ~ 27107385 (-)
LOC122344921 NA other downstream 3755296 25561974 ~ 25568686 (-)
G40182 brinp1,LOC107715673,LOC107674904 other upstream 134470 29460585 ~ 29490204 (-)
eng LOC107562335,LOC107704777,LOC107741503 other upstream 288604 29614719 ~ 29655061 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other upstream 598587 29924702 ~ 29928675 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other upstream 761851 30087966 ~ 30093576 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other upstream 1264728 30590843 ~ 30613141 (-)

Expression


Co-expression Network