LOC122344857


Basic Information

Item Value
gene id LOC122344857
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30039454 ~ 30046148 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU59775
TTATTGCTTAATGCATGTAACTAAAGCACAGATAATCACGACTTAATGTATAACGCATGAAGAGATAGACCATTTATTACTGCATCAGCAACTAATAAGCATTGCATATAATTCATAGATTAAGTAATGAATCAATTATTATTCGTTAAATGTGTCATGAACTGATCCTCtaataacatattatattatattatataaaattaaattcacatGGTTGAACCTATGAAC
>XR_006250938.1
TGTACATGTATATTAGTTCCTTGGCCAGGTTTTTCTTCCCTTTGTTCTGCTCTTGTTCCATGTGAGTTCCTTTCCTGGATGAATCGGCTGAAGTGAGAACTATTCTTGAACTGTCTCAACTCTTCATATAACTGCGGTGTGGAGTTGGACTGGCGAGCCTCCTTTAAGCGAATCTTTGAACCTTTGCGTGAATTTCACCGGTTGACAGACACAGGAACTAAACTTGCACACCTTCAACTGaccTGCGCCCAGACGAGCTGCTGAATGCAAAGCAGGAGAGAGCTGCGTGTGAAGCTGGAAAATCTCGCTCGAGTCAATCTAGCGAACAAATGTCAAGAACCGGCCGCTGAAAGCCAGCAGAGGTCATGAACCGCTAACGGCCCTGATGAGGAGATGAACATGAAGGTATCATTAGAGcgacactcacagacacacacacactcacagacacacacacactcacagacacacacacactcacagacacacacacactcacggacacacgcacactcacagacacacacacactcacagacacacacacactcacagacacacacacactcacagacacacacacactcacggacacacgcacactcacagacacacacgcgcgcgctcgctcatacacacacgcatacacgtTAATCTAAACGCCAGTTATTAATACGCTCACACTGTCACCTCCAAAACAGAGCAGCCGGCgctaatgaatatttaattgacaTAACACACAGTGAGTCGTGCCAGTGTTAATATAACACTGATGTGAAGTGCTCACGCTAAACGACAtgaacacaccagtcacaggaGAGCTGCGTCTCTTCACTGAGATCAAACACAAGAAGAACCACACTGTCCATCTTCAGAaaacagaatcagaatcagTGCTGGGAGAGATACTCTGGAAGTATCACGGTTCctctgttttaaatgtaataagtagCTTTTTTCTAGCATCATTTTCCCTTGTCAATcatattaaaacatgtaaagCAGGGTTAACTTTACACTATGCTATAATACTCAACACTAATTTCTGTCAGActttgaaaatcatttaaattaagagtaaaataatttcagtttaaaGCACAGCCACCATAAAATCAAACTTTAGCACCTCCGTCTCTGAGGTTAAATgtagatttaaaatcataagaAAAAGTTGAATAGCTGTGTTTATGAAATCATTTCCCAAAAAGGAAATACAATAGATCCAGTCATAAACTCCTGAAACACTGGGGTCTCTTTAACCAGTCAATGCCATTTGGGAATGAAATCAATCATATCTGTATAGTATGTGTGTGacaatgtaaaacaaatgtaattcttaacattttcataagtagctgtaatttaattacacattttatccTCAGTAACTGTAACAGATTAACTGGGTTACATGTAACTAGTCCCTCCCCAGCACTGATCAGTACAGCAGAAGAAACGCAGATGATGACGCACCGACGCAGAGAAGCACAGGACTAATGCGACGCAAGCAGCAGGAAACATGCTCTCTTACCTGGACGTCTCTAAACACTTTCAGGAGTGCTTTGAGTGAAACACAAGCATCAGCGAAGCTTCAGCGTTCAGCGGCTCTGTGTCTCGCTGCTGCTCAAGCCTCTATTTATCTTTGCTAAATGACTCAGGTGAATCTCACTGGTGATTCAGCAGGTGTCACATCTTGGCTTTAGAGACAGTAGAGCATGAgtgggcacacacacacacacacacacacacacactcttcatcaGGAGCTCATCACGTCTCCTCTGCTGTTCTGGGCTTCTCACGCTCACTCACCAACAGCATGATTcatacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcagttaaaCACAGCTAATAACACACTTAACCCTTTCTGTGTAGGTAAATGTGAGCCGTAATCAATTTCATATCTCTATAGAGCCACATGCGTGAAAGATTCATAGAGAGCACGTCTTTACTGAGGAATCATAATACACTACTGTCTAATAATCAGAGAATACAATAAACATAATTAGAGCTCTAAAGTCTTGCTCTAATTAATGAGAAATCGGTGACACTTCACAATATGGATGCACTAACATACATATATTCTCCAATTCATTACTGTTCAGTGCATTGAAACAATATTTACTGTTAAAAGTGTTGTGTAAATAAAGGTGATGATAAAGGTGGCATTAATTATTGCTTAATGCATGTAACTAAAGCACAGATAATCACGACTTAATGTATAACGCATGAAGAGATAGACCATTTATTACTGCATCAGCAACTAATAAGCATTGCATATAATTCATAGATTAAGTAATGAATCAATTATTATTCGTTAAATGTGTCATGAACTGATCCTCtaataacatattatattatattatataaaattaaattcacatGGTTGAACCTATGAACTTCAGCTTCCAGTTGTCtgctttaattaaacattagctAATGATTTGCAAAGACAGCTCATTCAAAATCCATAAACACAATGCactaaataatttgttaatagTCTTGTGCCTCAACAAGTAAATATTAGTTGTATTCTTATGTTCTGATTACTCTGATCTCTTCTCACAATCAGCTGTTCTCTTCGAGCGTTTGCTGTGTCTCTGATTCACAGACGGTCAGAAGTTCATGAAGAGTTCAAGCGGTCAAACACTCGAGGAACGCTGGCAGTGACGTCAGGCTTAATGATTCGAACCCTCGTCAGCTGAGCAAAATTATTAAAGAGGAACATGTGTTTTATGCTGCTTCTGGTTTTGAGGAAAGAGGCTGCTGTTGAAACGCTCTGAATCACCGACTCAAGCAGCAGAAACACACTAATTCTCAGCCTCTGACTCAGGTTTcaattttataaaacacttttttcaaaacGACACATAATTCACTCCGTAACACAAATAACAGGAAGTGtcttgatttccttttttttagaCACAACCAGTCAGAATAAATCGTCACAATCAACACACATCTACACAACTTCACACGCTTGATGTGTTTCTTTCCTTCTGTGAGATACTGTTTTCACAAACACAGCTTACAGTAAAAAAGATGTGTTTCAATCTTGTATCTGTGATTACTTTCAGCCTTGTGGCTCATGAAAGAACAGCCTAGGTTTTACACAACTGTTCATAACTAAAATATTATGACGtgaagcattttacattttgtgtgtgcaattcctgaatgttttgaaaatgtgtgtaagccgttgaaaaaaacacaaagtgaaATGAATTGTCTCTCACGCTGAGTGAAACACTGCAAGGTGAAGATTCAGCTCTAATGCCCAGAAACAGaccacaaaatatttcaaaatcagTTATTCTCGGAAGAATGTCGGCGTGTCCAGTAATCTCAAGTGTTTGTCAGCGGAGGGAAGCTCTTATCTTTGGTTTGGTCTGTGGGCGTTTACCTCCGAGGGTCACGGGGTCAAAGAACAGCGGGGTGAGTCTCAACAAATCAGgacaggacaaaaacaaaaggaaaaggattatttattcacaataaatttatacatcatttatatatatatatatatatatatatacacataaaaagaGCTggctctgaatcactgaaaagAGTTTCCacggtaacgctgtacacaaagcagcgctgcgatcacaaacactgctttatcacacattacacacatgaTGAGATGAACATCGATTGGGAAAGTTAggataaatacatattataagacaatgaaagtgttttatgtCCAGAAAATAACCTTTTCATCACCCATGATAGGGACACTAGACGAGCTGTTAGAACGCAGAACGCAGCTAAACGCTCGTGAGGACGTGAGGAAGATGTGAGGATGACTGTCAGACACTCAAACCATTTATAATCTTTCAGTATTACAAGGACAAACACCTGGAACCAAGACATCCTCAAATAAAGACCACAGTCTCGTTTGCTGGgattgaaataattaatatgtgtttattgCTTTCTGTGATGTCAGAGACAgaggcaggaaaaaaaaaaggttctgcttgttttattaatcattacaTGGCGTTTCTTTAAGAGCGAACTCCAGCGCTGTTCTGGAAACACACAGCGACGGGACGAGAATCACACGGGTCTGAACGAGCGAAGAAGACCAGAATAAACTCATCTCCTCTAGAACTGATTGAAGTGTTCGTGTGTTTATGCTCCAATCCGGTGTTTGATTTCAGACACTTTTCATCTGCTCTTTTGGTTTCTCTCATCCCTCACCTGGAGTAAGAGCACGTTAATAATGAAAGtgtaaactttcattttgatgCTTTAcagtttgtgttattattattagactgTTTGTTAAAGAGTGAAAAATCCCACACAGAGAGATGAagagcacaaacacaaatcatttgtttttcgTCCCTGGTCCTGTGAAGAAGTGCTGAGCACAACACGAGTAAAGTAAAACCCTCAGAGCTGTTCTCAATTCAATCTAAAGCACAGCTTCACGGAGCTGATTGCTTTTCTAAATCTGTTAGCATGTGCTTAGCCCACATATGAAGGTGGAAAggtgagtttctttcttctgctgaacacaagaGTTCCCAGACACCACTGTTTTCTgtagtacttttatttaatttcatatttcactttgaaaatcaACGGCTTCCAGCATCTGTTTGCTTCCCAGcgttcttcagaatatcttcttttggtAAACAACTCCTGGTTCTTCTGTAGATTTTACCTGCTCTGCTactattttaactgttttaattcatttaaaaaaaatgtaaatcattttaaaatgttgctcccttgattttatttgtgtggTTATTTTTAGTTCCTTTCTGTAAATTACTTTGAATCACCATGTGCATTAAATGTGGCGTATAAATAAACTTGATAAATGAAACTGTAAGAGAAAATGTGCTTGTGTCTGCATTTTGGGAAATATACAGCACAGGGACAACACACAGTTTAGCCTTGGTCTTTATGTCTCTTTTCATGTTCTTACAGTATGCTGACTTTAGGATGGCCTGTTTTTATCACTTCTGTGTAATCACTTTGAATTAGTTTTCTGTATTAAAGAcgcaacataaataaatatgcctTGCTTGTGTCTCTTTCTGTTGTCTGTCTCGTTCagacgttcacacacacactcgtttaATCACAGAGCAGGCTAGTGTTTGTCTCTCTTCCCTCTTCTTTTATTAATGTGTCTGTCGTTCTTCTCATTTTCACTGTGATTGTTGACACGCAGAATACAACATGACTTTATTTCATTCCAGATGTTTCTGAGTCTCACTGTTGCACAAGGATTTCTCTGTTCATTCACACAAGagcagtgacacacacacacacacactaacacacacacacacacacacgggtggGTGGAGCCGTAGGAAAATGCAGCATGTTTCTCTGATGTGAGTGGGTGAGTTTGAAAGATCATTAAAGCAAAAGACAGTGAAGGAAAATAAAGCCGCCGTTCGTACAGCAACATGAGAAACGCATCAGTCacagaagaacacacacaagcagtgtgagagaggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagaaggagtctgtgtgtgtgt

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0043383 negative T cell selection biological_process
GO:0030217 T cell differentiation biological_process
GO:0045058 T cell selection biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59775 False 228 lncRNA 0.27 1 30042640 30042867
XR_006250938.1 True 5629 lncRNA 0.40 3 30039454 30046148

Neighbor

gene id symbol gene type direction distance location
june LOC107687249,LOC107721038,LOC107563389,LOC107684195,LOC107735627 coding downstream 5242 30027830 ~ 30034212 (-)
thap1 thap1,LOC107563391,LOC107684196,LOC107687269,LOC107558071 coding downstream 27445 30006999 ~ 30012009 (-)
LOC122344968 mob3b,LOC107558072,LOC107563392,LOC107721040,LOC108414757 coding downstream 33485 29997436 ~ 30005969 (-)
LOC122344964 LOC107721044,LOC107563395,LOC107558067 coding downstream 68545 29967407 ~ 29970909 (-)
sapcd2 LOC107742165,LOC107660368,LOC107565658 coding downstream 96277 29928823 ~ 29943177 (-)
trabd2a trabd2a,LOC107558059,LOC107570885,LOC107717329 coding upstream 76078 30122226 ~ 30164017 (-)
mbd2 mbd2,LOC107717343,LOC107565141,LOC108438699,LOC108260323,LOC105902559 coding upstream 444883 30491031 ~ 30511279 (-)
LOC122345124 si:zfos-128g4.1,LOC107675886,LOC107577831 coding upstream 474458 30520606 ~ 30523419 (-)
LOC122345715 LOC107687242,LOC107717337,LOC107558070 coding upstream 489686 30535834 ~ 30537915 (-)
LOC122344973 NA coding upstream 494349 30540497 ~ 30542440 (-)
G40268 LOC107741500,LOC107562332,LOC107704753 non-coding downstream 233652 29801194 ~ 29805802 (-)
G40266 NA non-coding downstream 353727 29685128 ~ 29685727 (-)
G40264 NA non-coding downstream 392441 29646617 ~ 29647013 (-)
G40083 NA non-coding downstream 1708978 28326897 ~ 28330476 (-)
G40081 NA non-coding downstream 1746517 28292726 ~ 28292937 (-)
LOC122345788 NA non-coding upstream 7464 30053612 ~ 30054797 (-)
G40422 NA non-coding upstream 59694 30105842 ~ 30106738 (-)
G40418 NA non-coding upstream 70260 30116408 ~ 30117863 (-)
G40654 NA non-coding upstream 251246 30297394 ~ 30419407 (-)
G40676 NA non-coding upstream 435873 30482021 ~ 30482226 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 110779 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 384393 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 549250 29460585 ~ 29490204 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other downstream 713339 29323982 ~ 29326115 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other downstream 1774750 28255828 ~ 28264704 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other upstream 41818 30087966 ~ 30093576 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other upstream 544695 30590843 ~ 30613141 (-)
G40711 NA other upstream 584880 30631028 ~ 30733360 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 743485 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 771584 30817732 ~ 30826358 (-)

Expression


Co-expression Network