LOC122345788


Basic Information

Item Value
gene id LOC122345788
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30053612 ~ 30054797 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU59777
CAGATGTGAGATGCAGTTTCGGAAGATTCAAGGCACCGAAATGAAAGAGATTAAGGTCAGAGAAGCTGAAGGCAATTGAGAGTGACGTCTGAAACAGGGTTCATCTGCAAATGTCCTGGTTCATTTGATGTACATGTATATTAGTTCCTTGGCCAGGTTTTTCTTCCCTTTGTTCTGCTCTTGTTCCATGTGAGTTCCTTTCCTGGATGAATCGGCTGAAGTGAGAACTATTCTTGAACTGTCTCAACTCTTCATATAACTGCGGTGTGGAGTTGGACTGGCGAGCCTCCTTTAAGCGAATCTTTGAAACCTTTGCGTGAATTTCACCGGTTGGACAGACACAGGAACTAAACTTGCACACCTTCAACTGGTAGGAGTGAAATTGCACAGTTCACTTTGTCCTGATCTGGAGTGGAGACTAAAGACTGAGATTACCATCAATTAATTGACAATTGAGACGGAATTTCTGAATCCTCAGGTTTTTTATCAGTTCATTGAGgaaattaatgcttttgtgAAACTTGGGTACGTCATTCAGAGAAattatactttgttttatttgttcattttcctAATTATAAGTCtgtgttgtttatttggtttaaagggatcactaaaataaaatctcattcaAATAACTTGTTCACTTCTGctacattctctctctctctctctcggacGAACCAAACCTTTG
>XR_006251033.1
CAGATGTGAGATGCAGTTTCGGAAGATTCAAGGCACCGAAATGAAAGAGATTAAGGTCAGAGAAGCTGAAGGCAATTGAGAGTGACGTCTGAAACAGGGTTCATCTGCAAATGTCCTGGTTCATTTGATGTACATGTATATTAGTTCCTTGGCCAGGTTTTTCTTCCCTTTGTTCTGCTCTTGTTCCATGTGAGTTCCTTTCCTGGATGAATCGGCTGAAGTGAGAACTATTCTTGAACTGTCTCAACTCTTCATATAACTGCGGTGTGGAGTTGGACTGGCGAGCCTCCTTTAAGCGAATCTTTGAAACCTTTGCGTGAATTTCACCGGTTGGACAGACACAGGAACTAAACTTGCACACCTTCAACTGGTAGGAGTGAAATTGCACAGTTCACTTTGTCCTGATCTGGAGTGGAGACTAAAGACTGAGATTACCATCAATTAATTGACAATTGAGACGGAATTTCTGAATCCTCAGGTTTTTTATCAGTTCATTGAGgaaattaatgcttttgtgAAACTTGGGTACGTCATTCAGAGAAattatactttgttttatttgttcattttcctAATTATAAGTCtgtgttgtttatttggtttaaagggatcactaaaataaaatctcattcaAATAACTTGTTCACTTCTGctacattctctctctctctctctcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59777 True 694 lncRNA 0.39 3 30053612 30054797
XR_006251033.1 False 677 lncRNA 0.39 3 30053629 30054797

Neighbor

gene id symbol gene type direction distance location
june LOC107687249,LOC107721038,LOC107563389,LOC107684195,LOC107735627 coding downstream 19400 30027830 ~ 30034212 (-)
thap1 thap1,LOC107563391,LOC107684196,LOC107687269,LOC107558071 coding downstream 41603 30006999 ~ 30012009 (-)
LOC122344968 mob3b,LOC107558072,LOC107563392,LOC107721040,LOC108414757 coding downstream 47643 29997436 ~ 30005969 (-)
LOC122344964 LOC107721044,LOC107563395,LOC107558067 coding downstream 82703 29967407 ~ 29970909 (-)
sapcd2 LOC107742165,LOC107660368,LOC107565658 coding downstream 110435 29928823 ~ 29943177 (-)
trabd2a trabd2a,LOC107558059,LOC107570885,LOC107717329 coding upstream 67429 30122226 ~ 30164017 (-)
mbd2 mbd2,LOC107717343,LOC107565141,LOC108438699,LOC108260323,LOC105902559 coding upstream 436234 30491031 ~ 30511279 (-)
LOC122345124 si:zfos-128g4.1,LOC107675886,LOC107577831 coding upstream 465809 30520606 ~ 30523419 (-)
LOC122345715 LOC107687242,LOC107717337,LOC107558070 coding upstream 481037 30535834 ~ 30537915 (-)
LOC122344973 NA coding upstream 485700 30540497 ~ 30542440 (-)
LOC122344857 NA non-coding downstream 7464 30039454 ~ 30046148 (-)
G40268 LOC107741500,LOC107562332,LOC107704753 non-coding downstream 247810 29801194 ~ 29805802 (-)
G40266 NA non-coding downstream 367885 29685128 ~ 29685727 (-)
G40264 NA non-coding downstream 406599 29646617 ~ 29647013 (-)
G40083 NA non-coding downstream 1723136 28326897 ~ 28330476 (-)
G40422 NA non-coding upstream 51045 30105842 ~ 30106738 (-)
G40418 NA non-coding upstream 61611 30116408 ~ 30117863 (-)
G40654 NA non-coding upstream 242597 30297394 ~ 30419407 (-)
G40676 NA non-coding upstream 427224 30482021 ~ 30482226 (-)
G40677 NA non-coding upstream 429219 30484016 ~ 30484242 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 124937 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 398551 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 563408 29460585 ~ 29490204 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other downstream 727497 29323982 ~ 29326115 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other downstream 1788908 28255828 ~ 28264704 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other upstream 33169 30087966 ~ 30093576 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other upstream 536046 30590843 ~ 30613141 (-)
G40711 NA other upstream 576231 30631028 ~ 30733360 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 734836 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 762935 30817732 ~ 30826358 (-)

Expression


Co-expression Network