rnf170 (rnf170,LOC107721034,LOC107687247)


Basic Information

Item Value
gene id rnf170
gene name rnf170,LOC107721034,LOC107687247
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30087966 ~ 30093576 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU59790
GCGGAAGTAACCGAGTCCACAacgaaaacacacaaacaccaaaCACTGATCTTTACCTGAAACTGCGGTGTCTGTCTCATgtgtgtgtgagtctctgtCTGGAGGATATGTGCAGGTGTGATGGaagcgagtgtgtgtttggacgACTCGATGGCTCCAGATGAGGGCTCTCTGATTGAAGGAGTGAGTGACCCCGTGCTCCTGGTGCTGGTCCTCAGCGTCACCTTTCTGGTGGGTCTGGCAACGCTGCTCTGCAGGAATGAGCAGCAGAGGATTCATCCGGACAATCAGGAGCACGTGCGAGTGGTCAGAGAGCAGCTGCAGTCCGAGCAGGTTCGTCAGATACGCTTCATTTATCAG
>TU59791
GCGGAAGTAACCGAGTCCACAacgaaaacacacaaacaccaaaCACTGATCTTTACCTGAAACTGCGGTGTCTGTCTCATTCTCTCCCGTgggcaggtgtgtgtgagtctctgtCTGGAGGATATGTGCAGGTGTGATGGaagcgagtgtgtgtttggacgACTCGATGGCTCCAGATGAGGGCTCTCTGATTGAAGGAGTGAGTGACCCCGTGCTCCTGGTGCTGGTCCTCAGCGTCACCTTTCTGGTGGGTCTGGCAACGCTGCTCTGCAGGAATGAGCAGCAGAGGATTCATCCGGACAATCAGGAGCACGTGCGAGTGGTCAGAGAGCAGCTGCAGTCCGAGCAGGTTCGTCAGATACGCTTCATTTATCAG
>XM_043238950.1
GAAGGGGGCGGTAACGAACGAGTAATCCGCGGTTAAGAcacgaagaagaagaacaagaagaatGCGGAAGTAACCGAGTCCACAacgaaaacacacaaacaccaaaCACTGATCTTTACCTGAAACTGCGGTGTCTGTCTCATgtgtgtgtgagtctctgtCTGGAGGATATGTGCAGGTGTGATGGaagcgagtgtgtgtttggacgACTCGATGGCTCCAGATGAGGGCTCTCTGATTGAAGGAGTGAGTGACCCCGTGCTCCTGGTGCTGGTCCTCAGCGTCACCTTTCTGGTGGGTCTGGCAACGCTGCTCTGCAGGAATGAGCAGCAGAGGATTCATCCGGACAATCAGGAGCACGTGCGAGTGGTCAGAGAGCAGCTGCAGTCCGAGCAGGTTCGTCAGATACGCTTCATTTATCAGTCTCCGGTGCTCCTGCTGTTTATTCAAGCTCGCTCTTACGCTCTATATTTGGGTCATGAGCTGGAGGCCAAGTGTAAAAATATCCCTCGGTTCAGCTTCAGGCCGCTCGGGTTCGCCTCTGACCCGCTGGCCCCGCCCCCTCTGGCCCCGTCCAATCACCAGCCTGCTTCTGCTGTCTGTCAGGAGCTAAAACTAGCAGGTGAAGTTAGATCCTCAGCAGAGGAAACGATTTCAAGTCAGGAGAAAATATCATTCTACATTTCCAAACATCCGTTTTGGccattaatcataataatccaCTGCCCAGGCATCAGTTCTACCGAGACTAACTGCGGTCATCTGTTCTGTGGGCCGTGCATCATCGCTTACTGGCGATACGGGACGTGGCTCGGAGCCATCAACTGCCCGATCTGCAGACAGATGGTGACCCTGCTTTTCCCGCTCTTTCACGACACGGGGCTGAGCGCTCAGACGCCGGACGGTCAGGTGGAACCCGCGCTGGTCCTCAGCGACATCAACGACTACAACCGGCGCTTCTCCGGCCAGCCGCGCTCCCTGCTGGACCGTCTCAGGGACGTCCCCACACTGCTGCGGCATGCCTTCAGGGAGATGTTCTCCGTGGGTGGTCTCTTCTGGATGTTCCGGATCCGGATCCTTCTCTGTGTTCTGGGAGCTCTGACCTATCTGGCCTCTCCGCTGGACTTCATCCCCGAGGGCGTGGTGGGGCTCCTCGGCTTCATGGACGACTTCTTTGTCATCCTCCTGCTCTTCATCTACATCTCCATCATGTACCGTGAGGTGGTGACGCAGCGGCTGGccggctgacctctgacctctgacctctgctgCTTCTGCTTCCCTTCCCATTAAACCTCATGCGTTCTGGCTTCAGCGCGGTCCAGAGTCTGAGCTGATGACCCATCAAGACTTTTctgcaatattataatattacatgtGTCAAATATGATAGAGCTGGGATGTGATATGCAGACTCAAGCTGCAGGAAATGtttgatacacacacatacacacacacacacacacacagagacacagacacacacacacacacacacacagagacacacacacacacacacacacacagagacacagacacacacacacacacac

Function

symbol description
rnf170 Predicted to enable metal ion binding activity and ubiquitin protein ligase activity. Acts upstream of or within chordate embryonic development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Used to study hereditary spastic paraplegia. Human ortholog(s) of this gene implicated in autosomal dominant sensory ataxia 1. Orthologous to human RNF170 (ring finger protein 170).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0009790 embryo development biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K15707 RNF170; E3 ubiquitin-protein ligase RNF170

RNA

RNA id representative length rna type GC content exon number start site end site
TU59790 False 360 TUCP 0.54 3 30091949 30093513
TU59791 False 376 TUCP 0.54 3 30091949 30093513
XM_043238950.1 True 1556 mRNA 0.54 7 30087966 30093576

Neighbor

gene id symbol gene type direction distance location
june LOC107687249,LOC107721038,LOC107563389,LOC107684195,LOC107735627 coding downstream 53754 30027830 ~ 30034212 (-)
thap1 thap1,LOC107563391,LOC107684196,LOC107687269,LOC107558071 coding downstream 75957 30006999 ~ 30012009 (-)
LOC122344968 mob3b,LOC107558072,LOC107563392,LOC107721040,LOC108414757 coding downstream 81997 29997436 ~ 30005969 (-)
LOC122344964 LOC107721044,LOC107563395,LOC107558067 coding downstream 117057 29967407 ~ 29970909 (-)
sapcd2 LOC107742165,LOC107660368,LOC107565658 coding downstream 144789 29928823 ~ 29943177 (-)
trabd2a trabd2a,LOC107558059,LOC107570885,LOC107717329 coding upstream 28650 30122226 ~ 30164017 (-)
mbd2 mbd2,LOC107717343,LOC107565141,LOC108438699,LOC108260323,LOC105902559 coding upstream 397455 30491031 ~ 30511279 (-)
LOC122345124 si:zfos-128g4.1,LOC107675886,LOC107577831 coding upstream 427030 30520606 ~ 30523419 (-)
LOC122345715 LOC107687242,LOC107717337,LOC107558070 coding upstream 442258 30535834 ~ 30537915 (-)
LOC122344973 NA coding upstream 446921 30540497 ~ 30542440 (-)
LOC122345788 NA non-coding downstream 33169 30053612 ~ 30054797 (-)
LOC122344857 NA non-coding downstream 41818 30039454 ~ 30046148 (-)
G40268 LOC107741500,LOC107562332,LOC107704753 non-coding downstream 282164 29801194 ~ 29805802 (-)
G40266 NA non-coding downstream 402239 29685128 ~ 29685727 (-)
G40264 NA non-coding downstream 440953 29646617 ~ 29647013 (-)
G40422 NA non-coding upstream 12266 30105842 ~ 30106738 (-)
G40418 NA non-coding upstream 22832 30116408 ~ 30117863 (-)
G40654 NA non-coding upstream 203818 30297394 ~ 30419407 (-)
G40676 NA non-coding upstream 388445 30482021 ~ 30482226 (-)
G40677 NA non-coding upstream 390440 30484016 ~ 30484242 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 159291 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 432905 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 597762 29460585 ~ 29490204 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other downstream 761851 29323982 ~ 29326115 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other downstream 1823262 28255828 ~ 28264704 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other upstream 497267 30590843 ~ 30613141 (-)
G40711 NA other upstream 537452 30631028 ~ 30733360 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 696057 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 724156 30817732 ~ 30826358 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 1237773 31331349 ~ 31350449 (-)

Expression


Co-expression Network