CI01000004_15010164_15028433 (NRD1A, NRDC)


Basic Information

Item Value
gene id CI01000004_15010164_15028433
gene name NRD1A, NRDC
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15010164 ~ 15028708 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15010164_15028433.mRNA
GAATAGACATGGTGTCATTACAAAAGTTGCTGCTAATTTAGTAATCGATGGTGGAAATCCAAATCCAGCAGCCCTGCTCAGTCTGCTGGTCCAGACCGGGGAGAACCACTCAGAGACCCCAACGCACCTCCAGGGGACAGTGGTGGAGGGGACAACCAAGGGGACCCTCAAATTATTAAATCCCCAAGTGACCCCAAACAATACAGCGGCTCTTTGTATTGGCGTAGGGAGTTTCAGTGACCCTAATGACCTACCCGGCCTTGCACACTTCCTTGAACACATGGTGTTCATGGGCAGTGAAAAGTACCCTTCTGAAAATGGCTTTGATGCATTCCTGAAAAAGCATGGTGGCAGTGATAATGCTTCCACTGATTGTGAGAGAACCGTTTTCCAATTTGATGTGCAGAGGAAACGCTTCAAAGAAGCCCTTGACAGATGGGCTCAGTTTTTCATCTGCCCTCTTATGATTGAAGACGCCATTGATCGTGAGGTCGAGGCTGTGGACAGTGAATATCAGCTTGCTAAGCCTTCGGACTCTCACCGTAAGGAAATGCTTTTTGGCAGCCTAGCAAAGCCCAACCATCCCATGAGCAAGTTCTGCTGGGGAAATGCGCAGACCCTGAAGACTGAACCTAAGGAAAAGAATATCAACGTTTACAAGCGACTCCGTGAGTTCTGGAAGAGGTACTACTCTGCCCACTATATGACCTTAGCTGTGCAGTCTAAAGAGAATCTCGACACCCTTGAGGAATGGGTCAGAGAAATCTTCAGTCAGGTGCCCAACAATGGGCAGGCAAAGCCTGATTTTTCAGACCAACTGAGCCCCTTTGAAACACCTTCCTTCAACAAACTTTACCGAGTGGTGCCTGTTAGAAAAGTACATGCCCTCACCATCACATGGGCTCTACCCCCTCAAGAGAAGCATTACAGGGTAAAGCCTTTGCATTACATCGCTTGGTTGATTGGCCACGAGGGAACTGGAAGTATTCTGTCCATGCTTAGGAGGAAGTGCTGGGCTCTAGCTTTGTTTGGCGGAAACAGTGAAACTGGTTTTGACCAGAACACCACCTACTCAATTTTTAGTATCTCCATCACTCTGACTGACGAGGGCTTCCAGAACTTCTATGAGGTTGCTCATCTGGTCTTCCAGTACTTGAAAATGCTTCAGACTCTTGGGCCCCAACAAAGAATATATGAAGAAATTCAAAAGATCGAGGCCAATGAGTTCCACTATCAGGAGCAGACTGATCCTATTGAGTATGTGGAGGACATCTGTGAAAACATGCAGCTCTTCCCGAAAGAGGACTTTTTAACAGGAGACCAGCTAATGTTTGAGTTCAAACCAGAGGTGATCTCTGCTGCACTGAACCTCCTCACACCAGAGAAGGCCAACTTGCTCCTTTTGTCCCCCGAGCATGAAGGCCAGTGTCCACTCAGGGAAAAGTGGTTTGGGACCCAATACAGTGTGGAGGACATACAGCAGCACTGGAGAGAGCTCTGGGCGGGGGATTTCGATTTAAACCCAAGCCTTCACCTACCTGTTGAGAATAAGTTCATCGCCACTGATTTCGCCCTCAAAACCTCTGACTGTCCGGACACAGAGTACCCTGTCAGAATAATGAACAATGAGAGAGGGTGTCTGTGGTACAAGAAGGACAACAAGTTCAAGATTCCCAAAGCATACGTGCGTTTCCACCTCATATCACCTGTGGTTCAGAAATCTCCGAAAAACCTGGTGCTTTTTGACCTGTTTGTGAATATCCTGGTGCATAACCTGGCGGAGCCGGCCTACGAGGCTGATGTGGCCCAGCTAGAATATAAATTGGTAGCAGGGGAGCATGGCCTGGTCATCAAGGTTAAGGGCTTCAACCACAAACTACCTTTGCTGTTCAACCTGATCGTGGATTATCTTGCTGATTTCTCCGCCGCTTCTGACGTATTCAGCATGTTTGCAGAGCAGCTGAAGAAAACCTACTTTAACATCCTCATCAAGCCTGAGAAGCTTGGAAAAGACGTGAGGCTTCTGATTCTAGAGCACTCTCGTTGGTCAACGATTCAGAAGTACCAGGCTGTTCTGGATGGGCTCGGTGTGGATGAGCTCATGGAGTTTGTGAGCAGCTTCAAGTCTGAGCTGTATGCTGAAGGACTAGTGCAAGGAAACTTTACTAGCAGTGAATCCATGGGGTTTCTGCAGTATGTTACAGACAAATTGCAATTCAAGAAGTTGCCAGTAGAGGTCCCTGTTCTCTTCAGAGTGGTAGAGCTCCCTCAGAAACATCATCTCTGCAAAGTCAAGTCTCTCAACAAGGGAGATGCAAACTCTGAGGTCACTGTGTATTACCAGTCTGGTCCTAAGAACCTACGTGAACACACTCTGATGGAGCTACTAGTGATGCACATGGAGGAGCCGTGTTTTGACTTCCTCCGAACCAAAGAGACATTAGGATATCACGTCTACCCAACTTGTAGAAACACATCAGGTGTCCTTGGATTCTCAGTCACAGTGGAGACTCAGGCCACAAAGTTCAACACTGAGCTGGTGGAGACAAAGATTGAGGAGTTTCTGGTGAGCTTTGGAGAGAAGATGAACAGCTTGAGTGATGAGGCTTTTAAGACACAGGTGACTGCTCTCGTCAAGCTGAAGGGTTGCGAAGACACCCATCTTGGCGAGGAGGTGGACAGGAACTGGACAGAGGTGGTCACACAGCAATACGTCTTCGACAGACTCAGCCGAGAGATTGATGCACTGAAACTCATGACCAAGGCTGAACTGGTGAACTGGTTCATGGAACACAGGGGTGAAGGCAACAGGAAGCTCAGTGTGCATGTGACCTTAGATTCAGCTGAAAATACATTGAGAATTGTCACGGTGCCAACTCTTACCGGGCATCACATGGAGTTGGCATTGTGTCTCCTTGTCCAGGCAGGTGGCACAAAGCAGCGCAGCAAGAGAGATGATCTCTGTGCTCCAGAATAGCTCTTCTTCTCTGACCACCCCGCCTCTCGTTGTTCTGACACTGCTGTCCTGAAGTACACTGGCTAGAGTTTCATCAGTCTGCTGAAACCGGCACAGTTTAAGAGGGATCACATTCTAAATATTTAGACAGTCTTGGAATACACTGCCTGCCTTTTGTAGTTAGACGATTCATCACCACGCTGTCACTTCATCTCACTCCTGCGGGGTGTCTTAATTGACAAGCTGCTTAAGTGGGAGGAGGTGTAGCTAAGACAGAAAACGATTGGATAATATGA

Function

symbol description
nrd1a Predicted to enable metal ion binding activity and metallopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human NRDC (nardilysin convertase).
nrdc Predicted to enable peptidase activity. Involved in positive regulation of membrane protein ectodomain proteolysis and regulation of endopeptidase activity. Located in mitochondrion.

GO:

id name namespace
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01411 NRD1; nardilysin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15010164_15028433.mRNA True 3252 mRNA 0.48 30 15010164 15028708

Neighbor

gene id symbol gene type direction distance location
CI01000004_14934532_14938094 NA coding upstream 72070 14933874 ~ 14938094 (+)
CI01000004_14919607_14929407 GOLIM4B coding upstream 80757 14919475 ~ 14929407 (+)
CI01000004_14910312_14915166 NA coding upstream 94185 14910114 ~ 14915979 (+)
CI01000004_14889786_14894594 KLHL6 coding upstream 115242 14889786 ~ 14894922 (+)
CI01000004_14877615_14885956 PAK2A, PAK2 coding upstream 123665 14877460 ~ 14886499 (+)
CI01000004_15048166_15051524 NA coding downstream 19458 15048166 ~ 15052817 (+)
CI01000004_15056504_15062261 RABGAP1L2 coding downstream 27214 15055922 ~ 15063180 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB coding downstream 62492 15091200 ~ 15097173 (+)
CI01000004_15110181_15110483 NA coding downstream 80890 15109598 ~ 15110625 (+)
CI01000004_15126731_15131774 NA coding downstream 97976 15126684 ~ 15132238 (+)
G33951 NA non-coding upstream 156722 14845345 ~ 14853442 (+)
G33924 NA non-coding upstream 201875 14768014 ~ 14808289 (+)
G33919 NA non-coding upstream 218049 14758132 ~ 14792115 (+)
G33662 NA non-coding upstream 474820 14535078 ~ 14535344 (+)
G33644 NA non-coding upstream 481383 14528530 ~ 14528781 (+)
G34004 NA non-coding downstream 7309 15036017 ~ 15036233 (+)
G34009 NA non-coding downstream 16534 15045242 ~ 15045445 (+)
G34017 NA non-coding downstream 65397 15094105 ~ 15094375 (+)
G34027 NA non-coding downstream 74642 15103350 ~ 15103577 (+)
G34028 NA non-coding downstream 75258 15103966 ~ 15104168 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 973264 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 2354453 12646838 ~ 12652570 (+)
G31865 NA other upstream 2815017 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 3342505 11666900 ~ 11667659 (+)
G31710 NA other upstream 3367764 11637251 ~ 11642400 (+)
G34220 NA other downstream 910649 15939357 ~ 15939950 (+)
G33815 NA other downstream 1034707 16063415 ~ 16066464 (+)
G34400 NA other downstream 1948620 16971995 ~ 17025976 (+)

Expression


Co-expression Network