CI01000004_15048166_15051524


Basic Information

Item Value
gene id CI01000004_15048166_15051524
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15048166 ~ 15052817 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15048166_15051524.mRNA
ATGACAGCTGGAACTGTTGTCATAACCGGAGGAATTCTCGCAACAGTGATACTCCTTTGTATCATTGCAGTGCTTTGTTACTGTAGACTCCAGTATTACTGCTGTAAGAGGAATGAGTCAGAAGGGGAGGCGGGCTCGGTCGGAGATCCTCAGCCACAGTTTGCCTGCAACGCATGCAGCGCTCCGGGAGTGGACGGGGCGGCCGTCACACCTCTCTCGCTGCCCTACGACCCCGGTCTGCCTCACAGCTACTGCCCGACTTGCTCGCCCTACTACCTCCGTGGCACGGATGAGATGCAAAATGGCGGCGAACGCCTGTCCTACATGCCCGCTCACTACGAGAACCATGGCGCCACTGCCCTTGGTCTGGCCGCCATGTACGGCCCCGTGCTGAGCCATCGCAGTACGCCAGACTTTTACACCAATACACGAGCCATCAGCACTGACGTCTGACCCTCACAGACCCGGAGATGAACCCAGGGACAGAGCTGCCTCTGTGAACCAAAGCATCTGGGGCCGTGTTATCTCCTTGCGCCAAGAGTCAAAAGACCTACAGGATGCCATGTTATTCTTCCTTGCAGGTCTAAGGCCATCTTCAGTCTTCCATTGTCTTTTGTTTTACCTGTTTACCTCTTCCTCTTGCACACCCCTCCCTCTCTCTCTGCTGTGAGGGTTGTGTGTTATATGACATGTTTGTGTGATTTTTGGCCTTTTTAATGTTAAAGGTTAAATGCAAATAGGATATTTTATTTATCTGGAAAAGGCAGATAAATAAGCATATGTTACATTTAGAAAGCAGCCCAAGGAAGCTTTATAGGCTCATCTCAAGTATTTTGTTGTTTATAGTGACATAAAAGGCAAACATTCCACACACATTTTTAATAACTTTTTAAAAAAAGTACTTTTGTTGGAAAGAGCATGACATTCAGCTTTATCTAAATAGCCCCTGATATGCTGAATCTCTTTATTTGAAACACTTATTTTAGGATGAGAAATTAACCAAAATGTAATCGTCTTCATGTGTATTGATCTGTTGGGAAAATGTAAAATGAATTATTGATGATGAATATATTGGTAAACTCATATTTGAATATATATCACATCAACTAAAATTCACAATGACACAGAGTGAAATGTGTGTTGACAGTTAAGATTGAGGTTGGAGTAATGTGTTGTTCATTCTCACTTATTTCTTTGTCCGTATCCACTACATTATCAATTAAGAGTTTTTTAAATGAACTTTTCAGTGCAGTTGCGGATATCTCCAATGTCATATAATTTATACACAACAGCTTCAGAAATCTTCTTAAGGCAAAGTCACTGAGAGAAAAATAGTAAAAACATTTCATTATTTTTGTTGAAATGATACTTAGGAACAATAATTTCCTTGTCTTTGCAAATGTGTTTGTGTAAATGATTATAATTTCTCACATACTTGTTTCAGTAGCCATTGGTTTATGAATTGTGCTTTCTGATGTCTATCTTCACACTTAAGCACTCTTTGTTAGTAACTGGATCACATTACGAATCACAGGATGGCACTTCTATTTTACATGTGAATACTTTTTGGCAAAAATTGAAGAAAAAAATTGCAAAAATCTGAAAGTATATCAGTCTATGGTTTAAAATACTGAAGAAAAAGAGTAGCTTATTGTACACCTATTTCACAGAATGCTTTTGAATATAAATGAAGCATTTATAAATGCCTGTAGACTTTTATAAAATTGGTCAAGTGTGATCAGAGTA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15048166_15051524.mRNA True 1746 mRNA 0.40 2 15048166 15052817

Neighbor

gene id symbol gene type direction distance location
CI01000004_15010164_15028433 NRD1A, NRDC coding upstream 19458 15010164 ~ 15028708 (+)
CI01000004_14934532_14938094 NA coding upstream 110072 14933874 ~ 14938094 (+)
CI01000004_14919607_14929407 GOLIM4B coding upstream 118759 14919475 ~ 14929407 (+)
CI01000004_14910312_14915166 NA coding upstream 132187 14910114 ~ 14915979 (+)
CI01000004_14889786_14894594 KLHL6 coding upstream 153244 14889786 ~ 14894922 (+)
CI01000004_15056504_15062261 RABGAP1L2 coding downstream 3105 15055922 ~ 15063180 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB coding downstream 38383 15091200 ~ 15097173 (+)
CI01000004_15110181_15110483 NA coding downstream 56781 15109598 ~ 15110625 (+)
CI01000004_15126731_15131774 NA coding downstream 73867 15126684 ~ 15132238 (+)
CI01000004_15200553_15209521 SLC1A8B coding downstream 145425 15198242 ~ 15209824 (+)
G34009 NA non-coding upstream 2721 15045242 ~ 15045445 (+)
G34004 NA non-coding upstream 11933 15036017 ~ 15036233 (+)
G33951 NA non-coding upstream 194724 14845345 ~ 14853442 (+)
G33924 NA non-coding upstream 239877 14768014 ~ 14808289 (+)
G33919 NA non-coding upstream 256051 14758132 ~ 14792115 (+)
G34017 NA non-coding downstream 41288 15094105 ~ 15094375 (+)
G34027 NA non-coding downstream 50533 15103350 ~ 15103577 (+)
G34028 NA non-coding downstream 51149 15103966 ~ 15104168 (+)
G34031 NA non-coding downstream 53605 15106422 ~ 15106699 (+)
G34032 NA non-coding downstream 53919 15106736 ~ 15160060 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1011266 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 2392455 12646838 ~ 12652570 (+)
G31865 NA other upstream 2853019 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 3380507 11666900 ~ 11667659 (+)
G31710 NA other upstream 3405766 11637251 ~ 11642400 (+)
G34220 NA other downstream 886540 15939357 ~ 15939950 (+)
G33815 NA other downstream 1010598 16063415 ~ 16066464 (+)
G34400 NA other downstream 1924511 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015715 si:dkey-193b15.8 coding NC_007113.7 CM002886.2 36862473 ~ 36892883 (+)