G40684


Basic Information

Item Value
gene id G40684
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30516065 ~ 30518455 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU60202
cATTTTGAATCAATTTTCTGATCTAAAGCACACTTTTTCATTGCACATTCTAATCAAGTTATTTTGATCGAGGAGATAAAACATGATCTGTTTGTGGATATAATTCTTTCATATGATGAGAACTAACAGGGACTTCGGTCAAACTCCTGAATGTATCTGTATAGAGTTTTTATCACGATATCATTATATTCAGGAGTGTGTTAAACGATCCTCAACCAGACGGTGAACACTGATTTCAGTGACCTCCTCGCCACCAGGTGCTGTTTTTAGAGCATTTAGAgagaaatgaatcattaaacGCATCGTTTGAGAGTCACTGAACAAGTCAGGTAAACACAAAGAGTATTGTAAGTGTTTCGTGACCTTTCTTACGCCTCATCCTTTCACGTCACATAACTTTAAGTGCTGAAATTAAGCCAAAAGCGGTCGTTTAATATGTCCTTCAAAAGCTTTATCGTGATAAATAATCCTCACGCAAGAGCTTGAGAACGTGATGCAATGTTAACGGTCAGATGTTGTCACCGTTTCCAGCGTCTGTCCTCGGGGACGGTGTTAATGAGCCCCGGCGGGACGCTCGTTTGACTAATGAATTACCTGCAGCTCGTCCTCCACGTAACCGTTTCATCACGAACGTCTTGTGCAACGATGCCCGCCGTATTACTAACACTTTCACGAGCTCTGATggggggtgtgtgtgtataagtatATTACCCACTAATgatagcaaataaaaataaaaaaaaagacattaaggcactggacataaaaaaaaaaaaaagaataaaatcttcttgtaaaacatgctcttatcttttttatttacagcttcAAAAAGTATTGAAGGACAAAAAGGGAAGTGTTTATGAACCTGCTCACACTCAGTAATGACCACAATAATTCTCAATATATCTAGTGTAAGAGAAGATCAGACTCACGCCGCGGTTCTCCGGCTCTGGACGCTGGCCCTGGGGTCGAGGAGGAGTCCTCTCTCTGAAAGCAGAAGAcaatcactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgagtgagagcgtgtgtgtgtgttcataagTCAAGTCACATTCATTTCTACGACACTTACACAGCATTCAAAGCAGATCTACAGTAATCACCAggaaaataaactatttaaaattaattatgaaacaaattgcatttcaatcatcatcatcatcgtcgtcacTATTATTATTCAGATCAAAACAGTGCCTGTGTTCAATCAATGAAATCAattcaatgttattttagtagcaAGATCCtactattgtttttattattattttgaattacgtgtttttgttgaaattttacCTAAAGATGTAGTCATTATGTagtgtttttgtcattattgttCAAATATGTGCATGTCtgattatttctatatttatattttatcacatcaagttaaaataaattatactgagaaacgtttcatttaaattaagaaattatttttttaattttagttttagtattagttaactataaaaaatgtgcatgaaataattaaagggaatattataaatacatttatgaattaaCAATATCTATACAATAATAGATACAACAATATCTATATTCATGGCAggacaaacatatatacatacatacacacacacacatatacatatatgaaataaaaacttattttggatgcagttaattatttgacagcactaattatatatatataaataatttttgattaatcCAACAAAtcaagtgtgtttgtgtcgtTTTATTTTCTCTAGTGCTTCTCTCTTCTTCCTGTTGAATGATTCCTCTCTTCAGAGAGCTGTACCTGGGGTCCTGCTGACCGGTGCTGCCTCTGCCGTACAGCGGGATCACTTTATCTCGACTGATGCCGGCCTTACACACGGGACACACCTGTCTGTTGGGCCTGGTTTCCAGCCACTgacgaaacacacacacacacacgcgctcagAACCACCACACACCGCCTGCgtcacacgctcacactcaccGAACCCTTACCTGATGAAGACACGGCCAGCTGAGACGAGACGTCGCGGTCAGATCCAGACAGAGGAGAGAAAACAGAGCAGTTATTACGGGGCCGGTGAGCGGCACCGAGGCTCTCGTGAGCGGCTCTCACCAGAAGAGGTGTCCACACAGACTGATGACGGCGTCTTTGGACGTGTCCAGACAGATGTTGCACTCAAACGTGCTGTCCTGAGCCCCCCCCCCGCCGCCGCTCTCTCCGGCCGTCTGACCGGTCGCCGCCGATGAAGAGGAGCTCTCGCTGGACGCTGCGCTGGCCATTCTGTGTTCACCTCGATGACCTCAGCGCTGACGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60202 True 2351 lncRNA 0.40 2 30516065 30518455

Neighbor

gene id symbol gene type direction distance location
mbd2 mbd2,LOC107717343,LOC107565141,LOC108438699,LOC108260323,LOC105902559 coding downstream 4786 30491031 ~ 30511279 (-)
trabd2a trabd2a,LOC107558059,LOC107570885,LOC107717329 coding downstream 352048 30122226 ~ 30164017 (-)
june LOC107687249,LOC107721038,LOC107563389,LOC107684195,LOC107735627 coding downstream 481853 30027830 ~ 30034212 (-)
thap1 thap1,LOC107563391,LOC107684196,LOC107687269,LOC107558071 coding downstream 504056 30006999 ~ 30012009 (-)
LOC122344968 mob3b,LOC107558072,LOC107563392,LOC107721040,LOC108414757 coding downstream 510096 29997436 ~ 30005969 (-)
LOC122345124 si:zfos-128g4.1,LOC107675886,LOC107577831 coding upstream 2151 30520606 ~ 30523419 (-)
LOC122345715 LOC107687242,LOC107717337,LOC107558070 coding upstream 17379 30535834 ~ 30537915 (-)
LOC122344973 NA coding upstream 22042 30540497 ~ 30542440 (-)
LOC122344972 NA coding upstream 57833 30576288 ~ 30580328 (-)
ass1 ass1,LOC107740768,LOC107687233,LOC107689608 coding upstream 103749 30622204 ~ 30644747 (-)
G40680 NA non-coding downstream 3095 30504796 ~ 30512970 (-)
G40671 NA non-coding downstream 25187 30490514 ~ 30490878 (-)
G40677 NA non-coding downstream 31823 30484016 ~ 30484242 (-)
G40676 NA non-coding downstream 33839 30482021 ~ 30482226 (-)
G40654 NA non-coding downstream 96658 30297394 ~ 30419407 (-)
G40670 ythdc2 non-coding upstream 45662 30564117 ~ 30564377 (-)
G40672 NA non-coding upstream 47229 30565684 ~ 30566156 (-)
G40698 NA non-coding upstream 48796 30567251 ~ 30570100 (-)
G40701 NA non-coding upstream 71742 30590197 ~ 30590640 (-)
LOC122345983 NA non-coding upstream 190318 30708773 ~ 30710678 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 422489 30087966 ~ 30093576 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 587390 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 861004 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 1025861 29460585 ~ 29490204 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other downstream 1189950 29323982 ~ 29326115 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other upstream 72388 30590843 ~ 30613141 (-)
G40711 NA other upstream 112573 30631028 ~ 30733360 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 271178 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 299277 30817732 ~ 30826358 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 812894 31331349 ~ 31350449 (-)

Expression


Co-expression Network